G206491 (LOC106561674)


Basic Information

Item Value
gene id G206491
gene name LOC106561674
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94354478 ~ 94359358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU233670
tgggtgactttcacttttgctTGAGTCATTTCCTGTTAAGGTttcttgacttttactcaagtatgactacTGGGTACATTTTCCACCACTGCGTAATAGTATCAAACCTGCATTGGTTCTCAACTGTCACACCAAAGAATCCAAATGGTTACCCTGCACCTCAGAAACTGCTGCCCTATCTACAtagtcatggaacactggtcactttaatcatgtctgTACACACCATTCTGTATAACTACTGCTgaacacaccttttctattcatatactgtccatactgtctatacacaccattgcTAGGTAATATTGCACTGTTGGCGATAGAAACATAAACATTTCGGTGCATCTGCGATAACgtttgctaaatatgtgtacgtgaccaatacaatttgatttgatttgaaaccaaACCACTTGTATTAACATGTTTTTCGAGAATCAGCCAGTCTATATCATTATGCTCTGGTCTACTCTgctactacagatgtaggatcttaatttgagctagttttctacagcaggaaataattttgcagcaacaggaaatgtggattataattaattggcattttttgtaagggttgatacattttacatTAGGGAAAATCAAATCTGACATTTTTAAAGCAGAAATTACTAActttaaaagcctttttaaaccttgaatacaccacaagtttgcatttcctgccatGCAGGAAAATTATCATCAACAAAAgatggatcaaattaagatcctacatctgtatagaaATGTTTGTTTCTTTTCTTTTTTGACTATGCATAGCTTGGAAGGAAAAGGGATAGGGTTAAGGGTGCTAGAGTATATTTTAAGTGCTTCTAACAATTCAGCATCTGGGCCTGTaatcacaaagtgtctcagagtaggagcgcagctctaggatcagattagccttttagatcagaatgaataagattacatggacattGGGAGACCTGATCTTAGAtctgcactcctactctgaggcaCTTTGTAAGTGCAGGCCCAGATGCTGATGACCACAGCCTAGTCCACTAAAAGGCAATTTTTCATGTTGTGGAAGAAGTACGCTCTGCTCTGCATCGATATAGCCTGCTTTGCAGCTCTGCCTGGCTAGGAGTCTGGCTTCAGTTCTGCAGTGAGTTCTGCAGTAACCTCACTGAGGTAGACACGCAAGACTTATGGCACATAAATCAATAGCAACAATGCAATGCAAAGCAATGGATATTCCCTTTGGATTTGAAGTGGTGCATGGGTGAAGAGAAACATAAAGCACAGGAGGATGGTTGGTTCCAGTAAGAGCATAAGTGCATCATGAGGACAACAATGTTGAGTTGTTCTAGAATCTTGTTCTAGAATCTTGGGTAAACTCAATCCTGGGTCATGTTGGTAATGGACTTCCATGGTTGTTTTCACTGAACATTCTCTCACTGTATtaataaccatcatcatcatccacaTCAATAACAGCATTAATAACAGCATTTATAACAGCATATTGCGGAAACAAGATCTTTTGCACCTGATCTGTTCAACATGTATTTATGttgtaggctatatacacagaggcACTTTCACTGAACCTGTTGCATGGTGAGAGGGGTAAAGGCACTAGCAACTAAAGTGCAAAATAATGATTTGCAGTATTTATTAAACAAACGTTAATTTCATTCAAATTAGAGCAATTTcgtttgttttgtttgtgaaaATAAACAAACGTCCCTAAATTTAGTGGTGAAATGGAAGACATGACTCATAATATGTTTACTTTTTCTTTGTTCAAAGAAGGTCCATGCACTGCACTATTgaagtaatactgtaatacttgTTGCGTATTTAGGAGAATATGCATTTTTGATAATAGGTATTTATTATGCTTCTTTGATCGAGAACGTTTTAAGTCTGAACCCCGGAGTTGGGTTTGGATATACTGTATTTAGTCACATTTCAGAAACGTTTCAgggatttttgtttttttaaattacccACGTTTCGTTTCCATGACAGTATGAGACACTATTCAGTGTCTGTAACTGCAACAAGCTGAATACTGACGTCATGCATTAGATATACTAGTATACACAGTATCTAGTCGATAGGCCGTAATGCAGGTTGATTTTTCTCATGCTATGATCTTAGTTTAGTTACTGTTTCCCTTACGATTTTTAACATTCACTCCCTAGATACTTCTAAACGATTAGCATTTTGAAATGAAAAACCTATTTGAAACCAGTACTGCACTCTCAGTGAAACAAAAGCATAAATGGGTGGAAGAATCGAATGAAGGCATAGGATGCAAAtatccaaaatatttttttctccattatTATGAGGTTATGTCTCATCATCACGCATGCCAATATCAACATGTATGGAGAGTTTCTAAACATGCTCATGTGAAGCTCTTTTGTTATATAATTGTGCTGTCTTGCATTTAAAGGGCTAAAATCCCATTGAATCACTTAGTGATATCATAATTACAGCATCTTACTGCTGGAAAATAGCAGCATTGCGGATGTCCGTATCCTAGATCCTCCTCGTCATCATCCAAACCAGGAGATCAGCGATCAGTCTTTTTCCTGGGCGCTTTGCTGGATAGTAAATCCTTTGATgacagaggggtagaggagtAGCCTCTCTGACTTCGGGCGAGGCGTCGCTCGATCCaaccactgtctgtctgactgctacAGATGCTGActtgcgtctctctctctctctctctctctgcaggcagCAGAGCATATTTCTGATGCATTTTCTCCTTGATGCATTGTGCAACTTGCTGAAATGTTATCTGTAATCCATGCATTACATTTTAATTACGACGCCTGGCTTCGTCTGATAAAGACAGATATGTCCTCATGAGTGCTGTTGATTAGTGTTCCTCCAAGGACGCCCGCATTTGCTTGTTAAATAGAAGttgtttcttttttctttttcaaTACTTATTTAAAGGATCATTTTAGAATAATTAATTTACTCTATCTATATGTTATATTCTCTAGTAACAGCTTCATTTTCTTTCCCCCCTGTAATAATTACTTTCAAATTGCTGCGCATGGTTGTTGTAATGCTAGAACGCTTATAGGAGGCGAATGAAGCTTTCAGACCTGATGGTCTAGTGCAGTTAACATGTGACGGCATCATTTAAGTCCCGTGGTGTCTAATTCTACACATCTGTGAGCAGCTTGCTTTTATTTACACAGTTTTGGTTGGCTATAGTGCAATTGCCAGTTCTGAGGTTTGCCTCTCTAAAGTTGTCGATGCTATTATTTATATCTCCATCAATCTCCATGTACTCTGATTTGCTGACAGTGGACGAGCTACGGCGACTAGAATTGCTTTCACTAATGTTTGGTTCACTAACGTTTAAGAGTTgggcctgctcctctccctcggtctccctGTGGTAGAAGTAGTTGAAGTTGGACACAATGACAGGCACTGGGAGTGCAATCGTCAACACACCAGCTATGGCGCAAAGGGAGCCCACTATCTTACCCCCTATAGTGACAGGCACCATGTCCCCATAGCCCACAGTTGTCATAGATACCACGGCCCACCAGAAGGCTTCTGGGATGCTGCCGAAGTGCGACCCTTTCTCCTCTGCTTCTGCGAAATACACCGCGCTGGAGAACAGGATGACTCCAATGAAGAGGAAGAAGATCAGCAATCCGAGCTCGCGCATACTGGCCTTGAGGGTCTGTCCCAGGATCTGCAATCCTTTGGAGTGTCGTGACAACTTGAAGATTCTAAACACTCTGACCAAACGGATCACCCTGAGGATGGCCAGAGATGTTGCCTGCTCCCCCATGCCCTCGTCCTGGTCTTCGGGGTCCTCAGCCAGCTCTGTTCCCAGTGTGATGAAGTAAGGAATGATAGCCACTATATCAATAATGTTCATCATGTTTTTGGAGAAGACCGCCTTACTTGGACACGCAAAAAAACGCACTAACAACTCAAACGAGAACCAGATAATGCAAAGAGTTTCAATAATGAAGAAGGGATCGGTTAGGATGTTTGGTTTGTAGTAAAAAGTATGGTTCCCTACAGTCTTAAACCGACCCCTGGGGTCTTCTTTCAAGTCAGGTAAAGTCTCTAAACAAAAGATGACTATAGAAATCAGAATGACCATAACAGATACTATAGCAATCCCTCTGGCTGGACCGGAGCTCTCTGGGTGCTCAAAAAGCAGCCAGATCTGACGCTGGAACTCCTTCTCAGGTAAAGGACGTTCTTCCTCTCTGACGAAGCCCTCATCCTCACGGAATTTCTCCATGGCATCCACTCCCAACTCATAAAACTTTATCTCTTCCGAGAACATATCCAACGGGACGTTGACGGGCCTTCTCAGCCTACCCCCGGACTGGTAATAGTAGAGGATGGCATCGAAACTGGGGCGGTTTCTATCAAAGAAATACTCGTTTCTCAGGTGGTCAAAGTAGCGCATCCTCTTCTTGGGGTTGCCTAGCAATGTCTCGGGGAACTGGGAGAGAGTTTTGAGTTGTGTCTCGAACCGCATCCCCGCTATGTTGATGACCACCCTCTCGCAGCAGTCGTGGTCTTCGTGGTCGGGGGGGTACGAGTCCTGCGGGTGCCCCGGCACTGCCACGGTCTCGTCCATGTTATCTCCTGCCACTACGGTCATCTTGTAGCTCGAATTCGGGAGCTCTGTTGCAGCAGGAGTTGTGGAATTCCGGGTTTCCCGGTTAATCTGATTGAACAGGCGGCATTCAGGTTTAGGCAGTATACAatttccttctcctctcttcttcttctccccctaTTTCTTGTGCTAGTCCCCAGACAGGGGGGGTATAACTTGCTTTGCCTCAGTGCGGCTCCACTGCGGTTCTGGCTGACTCAACCATTGCT

Function

NR:

description
potassium voltage-gated channel subfamily A member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233670 True 4881 lncRNA 0.53 1 94354478 94359358

Neighbor

gene id symbol gene type direction distance location
LOC110500101 LOC106561643 coding upstream 36823 94300169 ~ 94317655 (+)
zgc:136858 LOC106561644 coding upstream 54434 94270560 ~ 94300044 (+)
LOC110500081 NA coding upstream 85727 94264009 ~ 94268751 (+)
dnm1l LOC106561645 coding upstream 181682 94150431 ~ 94172796 (+)
LOC110500011 LOC106561648 coding upstream 205011 94145663 ~ 94149467 (+)
LOC110500139 LOC106561672 coding downstream 32006 94391364 ~ 94437682 (+)
LOC110500169 lap2b coding downstream 139594 94498952 ~ 94504181 (+)
LOC110500174 LOC106561671 coding downstream 146024 94505382 ~ 94513747 (+)
LOC118944177 NA coding downstream 151015 94510373 ~ 94510614 (+)
LOC118944176 NA coding downstream 153248 94512606 ~ 94512848 (+)
G206490 NA non-coding upstream 3952 94348552 ~ 94350526 (+)
G206485 NA non-coding upstream 14373 94339807 ~ 94340105 (+)
G206482 NA non-coding upstream 26335 94327928 ~ 94328143 (+)
G206480 NA non-coding upstream 35079 94319172 ~ 94319399 (+)
G206479 NA non-coding upstream 39606 94314633 ~ 94314872 (+)
G206505 NA non-coding downstream 25966 94385324 ~ 94385586 (+)
G206552 NA non-coding downstream 101481 94460839 ~ 94468127 (+)
G206553 NA non-coding downstream 122401 94481759 ~ 94481969 (+)
G206554 NA non-coding downstream 122714 94482072 ~ 94482311 (+)
G206555 NA non-coding downstream 128773 94488131 ~ 94488332 (+)
G206389 LOC106561642 other upstream 252606 94100979 ~ 94101872 (+)
G206285 NA other upstream 413007 93940486 ~ 93941471 (+)
G205688 NA other upstream 542309 93810360 ~ 93812169 (+)
G205683 LOC106573085 other upstream 555542 93796082 ~ 93798936 (+)
G205482 NA other upstream 952244 93401617 ~ 93402234 (+)
G206850 NA other downstream 197811 94557169 ~ 94562224 (+)
G206908 NA other downstream 272471 94631829 ~ 94632267 (+)
G206926 NA other downstream 346588 94705946 ~ 94706248 (+)
G208404 NA other downstream 1868435 96227793 ~ 96228463 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G87030 LOC103366871,LOC104946806,LOC106525492,LOC108230167 non-coding NC_053119.1 CM020916.1 21245010 ~ 21251759 (-)