XLOC_021452


Basic Information

Item Value
gene id XLOC_021452
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 5595648 ~ 5623669 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042651
cgaacccccctggctacgggcctgtattGGTAACAAAAAGGTAAACAGATAGGGACAGACAGACGTGTGATCGTGCGTAGGAAACGTCAGGTAACTGACAGGCTTTAAAAGTGAATGTTGAACATTGATTGGCCCGCAGTGCTGTGAAGTGGGCGTATCTTAGGTGTGGCTCCTTACTGAAGCGCTGGAGCTTCATCAGTTTCTCCGCCGCCGCGCAAGAGTTTGGAGAAGTTGAAGGACAGTCTGTCAGGTTTAGCCGAAGGTTCGTGCGCGCAGAGCCACCGAGAGCAGCGATGTCTGCCGAACCTATTCGCTCGGTTTTAGGCTCCGTTTCGACGGATGACACCTCGCTGGTCCTGCCGTCCGACAAGACTCAACGGAGGGGTCAGGAGCGCGTGCAGGAGCAGGTCAAGAGCATTCGAAGGAAGACGAAGATTGTCAAGAATGACTCCATCCCGTCGCCGACAACTCCAGCATCAGCGACAGAATACAGTGAGCCTAAATTCCAGTTCTCACCGGCAAAAGTGAACAACACACTCTTCAGATTTAGTGGTTCCAACATGACTACAACCCAGAACAGAATGACTGGTCGCAGCGTGTCAGTGCGCCACACTGTGAAAAGGCAGACCCAAAACAGCCAGTGGGACTCTCGGATGTCTTGGAATGCTCAGTCTAAGCCCAATGGGATGAAGCTCAGTGGCAGCGACCCTTCCTTAAATAAGATAGCTACCCAGAATTCTGTGGAAAGAGTCGCTACCATACGACAGAATCGTTCTGTACAATCTATGAAAGTGAAGAATTCTCCTCCGGTTGCTGCCAACCAAGCACAGACAATCACAAAAGTCATCAAGACCAAATCAGAAGCGCCGGGTGTGAATGGAGCCATGGGAGTGATGCCCAACATCACTCTGCAGGAAGCAGTGGATTATCTGACACACGAAGACATCAGTCATCAGCTGTGTGGAGCTTCATTCATACAGCACAACACCTTCACAGAGGACACGGCCAAACAAGAGGTCAGGACACTGACTCGTGTAGCTGAAGCAAGACTATAGTATCTATTAAACTTGTTCATGTTTTGTCT
>TCONS_00042652
ATGTCTGCCGAACCTATTCGCTCGGTTTTAGGCTCCGTTTCGACGGATGACACCTCGCTGGTCCTGCCGTCCGACAAGACTCAACGGAGGGGTCAGGAGCGCGTGCAGGAGCAGGTCAAGAGCATTCGAAGGAAGACGAAGATTGTCAAGAATGACTCCATCCCGTCGCCGACAACTCCAGCATCAGCGACAGAATACAGTGAGCCTAAATTCCAGTTCTCACCGGCAAAAGTGAACAACACACTCTTCAGATTTAGTGGTTCCAACATGACTACAACCCAGAACAGAATGACTGGTCGCAGCGTGTCAGTGCGCCACACTGTGAAAAGGCAGACCCAAAACAGCCAGTGGGACTCTCGGATGTCTTGGAATGCTCAGTCTAAGCCCAATGGGATGAAGCTCAGTGGCAGCGACCCTTCCTTAAATAAGATAGCTACCCAGAATTCTGTGGAAAGAGTCGCTACCATACGACAGAATCGTTCTGTACAATCTATGAAAGTGAAGAATTCTCCTCCGGTTGCTGCCAACCAAGCACAGACAATCACAAAAGTCATCAAGACCAAATCAGAAGCGCCGGGGTGAGTGTGCAGAAAATGCATGTTGTGGTTTGTTTACGGTTTTTTTGTTCTTGGTCACAGTTTTCTTATGAATTTGTCACTTTACCTGTGTGTCTCTGCCATATCTCTGAACTTAAAGTGTGAATGGAGCCATGGGAGTGATGCCCAACATCACTCTGCAGGAAGCAGTGGATTATCTGACACACGAAGACATCAGTCATCAGCTGTGTGGAGCTTCATTCATACAGCACAACACCTTCACAGAGGACACGGCCAAACAAGAGGTCAGGACACTGACTCGTGTAGCTGAAGCAAGACTATAGTATCTATTAAACTTGTTCATGTTTTGTCTATCTTTCTCTGTCAGTCTGTTTTGTt

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0140096 catalytic activity, acting on a protein molecular_function
GO:0030554 adenyl nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0032559 adenyl ribonucleotide binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117358

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042651 False 1084 lncRNA 0.50 4 5595648 5623643
TCONS_00042652 True 935 lncRNA 0.47 3 5595941 5623669

Neighbor

gene id symbol gene type direction distance location
XLOC_021451 smpd2a coding upstream 7714 5565261 ~ 5587934 (+)
XLOC_021450 tead3a coding upstream 37392 5499307 ~ 5558256 (+)
XLOC_021449 tulp1a coding upstream 97109 5465806 ~ 5498539 (+)
XLOC_021448 NA coding upstream 453733 5129982 ~ 5141915 (+)
XLOC_021447 zgc:194242 coding upstream 482650 5108374 ~ 5112998 (+)
XLOC_021453 pkp1a coding downstream 7712 5631381 ~ 5639675 (+)
XLOC_021454 ftr57 coding downstream 112557 5736226 ~ 5743144 (+)
XLOC_021455 CABZ01026153.1 coding downstream 247837 5871506 ~ 5922464 (+)
XLOC_021456 NAV1 coding downstream 354296 5977965 ~ 6067036 (+)
XLOC_021457 mybpha coding downstream 453834 6077503 ~ 6126003 (+)
XLOC_021441 LO017700.2 non-coding upstream 918148 4559564 ~ 4677500 (+)
XLOC_021432 NA non-coding upstream 1314541 4273916 ~ 4281107 (+)
XLOC_021427 FP102158.1 non-coding upstream 1650914 3939908 ~ 3944734 (+)
XLOC_021426 CU682640.1 non-coding upstream 1679894 3913304 ~ 3915754 (+)
XLOC_021460 NA non-coding downstream 704677 6328346 ~ 6341688 (+)
XLOC_021463 NA non-coding downstream 1011416 6635085 ~ 6661864 (+)
XLOC_021466 BX005466.1 non-coding downstream 1202019 6825688 ~ 6825802 (+)
XLOC_021467 NA non-coding downstream 1228262 6851931 ~ 6865956 (+)

Expression


Co-expression Network