XLOC_021455 (CABZ01026153.1)


Basic Information

Item Value
gene id XLOC_021455
gene name CABZ01026153.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 5871506 ~ 5922464 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042656
GTTACCAGCTTTCTTTACAAagcatattattttgtgtttaacaaaggaaaaagaaaaacaaaagatttcaaacaagtgaaggctgagtaaataatgacagacatttcatttttgggtgaacaccAAAAATTATTTTCCCCAAAGCTTGTCCTGGAGTCATCTAAATCAATTTCtagcatgcattttttttttttttttttactgaagctGACTCGGACAGCATAATATTACTGGCAATTATGTCCTTATTGGTTTTATGATAACAGAGCACTGTAGTGAACTGACAAGGACCAACAGAGGAAGCATATTGGCAGGGAACTGTTTAAGAACACACTGTAATTTATCATAGGTCCCTCATACTGTAACACTTGTGCAGGGGAGCAGTATAGCATCTTTAGAGTGGGTGTGTTGGaggaagagaaaaagagagagagaggcataAGAGAGAGGGGGAGGAGgcgggtgtgtgtgtgcttgaatgAGTGCGGGGGAGCAAGGGGAGGGACCGTTTCTGCGTCTGTCTTCGCTGTCATTCTGCTGCTGCACAGCAAAGCAGCGAGACACTCCGCTGAAgggaggagagagaaagagagagaaaatgagTGACTGGGTAGCACTAGAGCAGCTGCAACTGAGGCAGTCTAACTGAGAGGAGCCAGATGCTGGATTTACATGCTAAAGACACCAGGCACACGGATTACCTCTTCAGAACAGGATCTACCGAATGGTCTTTTTGCATGTGCTAATGGAGAGATAGCTCTCCCTGTAATAAGGATTTGGCAGCAAGTGACAAAGCTTGCAGACCCTTGTCTCTTTCTTTGCTCGATTGTAAAACCATTTGACTCACTGATGCTTTTACATGGTTTCACGCAGGAGGAATGCTTGGGGGTAGCCCAAGAAGACAAGGAGTAGATCTGGAGACTGAGGCTGACAAACCCCCCAAAGCCAAGACCCTTCAGGGCCAGGCAGGAGCCAAAGGAGTTGGAGGCATGGCTGCGAAAAGGGGCAAGTCAGGGCTCCCACAGGCTACTCCTCGGGCTGAGCTGAAGGTGTACCGAGCAGGGAACTCTGAGGGTCGTCTTCCAGTGCCTAGCAACTTGCGGAAACAAAAGTCCTTGACCAATCTATGCGTGCTTACAGATGCCGAGAAGAAGATGCACCTGTACCAGCCCAAGTGGTCAGACGACATGGAAAAACCTGGGACAGGTCAGAACAAATCAGGCAAGCTCAGAGATCCCGGAGGGAGCATTGGCAGGGGTATCCCTCTTTCCAAGAACCTTTCAAAATCGGAGCATTCGCTGTTTCAGGGAAAGCCAAAACCCTTTAATCCACCTTCCAGACTAGGGAAACCCAGTCGGATACCTAAAAGTCCTTACGCTGAGGTCAAACCCATCAGCAAGGCTCAAGAGCCGGCTGATGACAGCAAGTCCGATGATGAGATCTTGTCCAGCAAGGCTAAAGCTAATGGTAAGAAATCTTTGAGTGGTACTTCGGGATCAGCCACCCCAGGAGGAGATGGAGGTGGGAAAGATGGACTGGAACCGGAGGAAGGTGACAAGACCTTTCTAAAGGTGGACCCCGAACTGGTTGTAACAGTGCTTGGGGACCTGGAGCAGCTCCTCTTCAGTCAAATGTTGGATCCCGAGTCCCAGAGGAAACGCACTGTTCAAAATGTCCTCGACCTCCGGCAGAACCTGGAAGAGACCATGTCCAGCTTACGGGGGTCCCAGCTTAGCCACAGGTATGGAAGTCACACTTTTAGTGCTTGAAAAGGCCACAGAGTCTGTGCTGTGTCAGGATTATGacatgtgcatttgtttgttttaatgtgtgtttatttgtttatttattgggttttgttttgttgctttgcttttgctgtttgttttgatgctttttaatctttcattcaactttgtgtttgatttttttagcttattattttatttgtttttttgtaatcttgtttttagtttgctttgttttatgttgttttcttttcctttgcttcaatgtttatttttctccagtgttttatgcttttttgttttgtgtttcttttcTTTAGAATTTTCTTGggtgctttttttaaacatttgtttaactttgtgtttgattttttgcatatcgttttttatttatttattttattttgttttttattttgatttattttgtgtgtgtgtgtttttgttgttttcctTTGCTTcagtgttttatgttttttgttttgagaTTCTTTTCTTTAGAATTTTCTCGGGTGcttttttatcttttgtttaactttgtgtttgattttttgcttactgttttattttgttattttgtttttattttgctttattttgtgttgttttgttttgcttggattcaatgttttttttttctccagtgtttttatgctttttgttttgtgtttcttttcCTTAGAATTTTTTGGgtgcttttttatgttttgttcaactttttgtttgatttttttttcttgttgttttatttttta
>TCONS_00042657
ATTCattacatgatcactaatcagatgtgccattgtttttgtaactttaggtggcaTCCCCCCTTCAATTTCCCCCCTTCCTCAGCTTTTTTGGTACAGTCCAGCTAGCTTTTAGGTTCAGTCCCCATGCGCACCGAACCCAACGCGCAAGCATCTTCATACCCGCTCCCTGCTCTTCAGTTTGCGCCAGTTTGCGCcacacccccccacccccttcACTTTGCGCACACCCCCGGAGAAACTCTCCCAGATTTTATGATcccaatgttggcaggtatggtgagCAGTAATACGTCTCAGTCTGTGTGTATTTGAAGCTAAACTGATGAACTGATAAACGGAGGGGGAACTCTACTTTATAAACTGTGCTGTGTGGTTTTATGATCTAACGCTGTTTAACCGCTGTGTTTTTAGTAGGGAAGGCTGATTAAACCAAATACAGCACTTTTACTGTCAGCAGTTTTAAAACATGTCAAGAGTTAAGACGTATAATGCATTTCTCCCCAGTTTTACAGCTCGAATGTCAAATAAATCTGTATAAGCACATTTGCCTAAATAAAGAAAGCAATTAAACTGAAAGGAGACCTTTTACAAATACTAATGTCCTGTTTAAGTGAGCTTGCTAGTACAGTAGCTCAAAGTGCTTTTGGCATCCTGGTggaaatgtaatgtttaattcaTTCGACTCCTGCCCGCTTGCTGAATCGTCATATTCCACTGCCGCGTTGTGAAAGAAAGCTGTTTGTGTTtctcctgaaagctgagatgaCTGTACGTGTGCGAGTGGCTCGATATCATGCATCTACTGTAGATATACGCTGATGTTTTCATTGGCTCGTCTCCACCAAGCGTTAAATCTTAATGCAcatgggtgtgtttgtgtgtgtttggccACATCGCTGCTAAATGCCTGCATTAAGCATCCGCTCATCCTCTGCTCTTTCCTGCAGATCCCGAGTCCCAGAGGAAACGCACTGTTCAAAATGTCCTCGACCTCCGGCAGAACCTGGAAGAGACCATGTCCAGCTTACGGGGGTCCCAGCTTAGCCACAGCTGTATCGAGAGCAGCATGTGCTACGACAGCGATGAGACAAACGCCCGCAGCATCTCCAGCTTGTCCAACCGCTCGTCTCCTCTCTCCTGGCGCCAGGGCCAGTCCAGCCCTCGTCTGCAGGCTGGCGACGCCCCGTCCTCCGGGGTTCCTGCCCACTCACTGCCCATCCGAGCCTCTGCGCAGATCGGCCACCTGCAGCGCATTCAGCTCATCGAGAGCCTGGACACCACTGATGATGACCTGACACAACTTAAATCAGCATACCTCAGTGACGGCAACCTGACCGGCAAGAGCCAGGCTGAGGATGACGAAGATGAGGAGGATGATGATGTAGAagtcgatgatgatgatgatgacctcGCCAATGGGTGAGTGTTGCTGCTGCCTTTTTTGCTTGTTCGTCCTGCTATTATTATaattgtgtgtatgcgtgtgtgtgtgtatacatacgtatttgtttaattaaattttctttGGCTTATTCCCTGGCATATCAGTGGTTGAACAGTGGATTAAATTgcccatacatacatacagtatattcatttaaattattttatttaatgcactTATGTTCACATATTTGGGACCACAGTGTGTTTTTAAGTCAGTGATTATTTGAGGTAGCATGAATGTTAATTCGATCAAAAGTGTCAACAAAGAAGTTTATGTTGAgtacaaaaatatgtatattttccaTGTTCTGTTCATCAACTAATCCTGGAaaaagtgcatatatatatatatatatatatatatatatatttatttatttatttatttatttatttatttattttattttttttaaatatacagagcagttgtgcatttatttatttatttatttatttatttattctttaatttttatatatatatttgttagttagttagtataaTAATTTGCTACATATCTAAATTTGATCTAAAACCCCTGGATTGGAAATTTAATGGTCAAACACCTGATGAAATTTAACTAGCATTTCAAATGCAGCATGAGCTTTCCTAAAAAgaaaggttataatagttttggatttttcattagttttagttttagttttgttttgactttgtgtttttttaaatttagttagttttaattagtttttagaggcagACGTACTAGTTTTTATTAACATGTTTCCACCTCAGGTTaacttatataaataaaaaaaacacagttgtTGCCTTTATCTCATaactctgacttttttttttccgctTCATAATTTTGCCAAAATTGAGTTTGTATCTTGCAATTGCaattgcaacaataaaaaaacaattactgcTCTGcacaaaatatctgtaaattaacagatttccgtattttgtgattgatgtttttatttttacctatttatttttagcttttgaaTAGCATTACGGgcccttgatctttcttccaacaaattttaaccttgaaaaatGTGGGGAAAAAAGGGACTTATGGACATTTTTAAGAATTTACAGCAATATATTGTCTTAGTTGGTGTTTTATATCATTGTAACACGAGGAGTGACAAAGACAACAGAGTTCgcatccacatgcaggtttattaaagatgtcaggcaagcaatggtcaacacgggtGCCAACAGATCTATGAAGGCAATCCAGAAACGTTTTCAGAGTAACAGACGAGAGGtcggaaggcaggcggcagacatgGACAAAAAGACAAACTAGGCGAGGGTCAAAACACGGAAAAACAAGACAGGATAAACGTGTTGCAATGCCACTTATAGTGAACAATAGTGCATCTATGAAGTTTTAGTCCAGAACCTAGAAGTGGCGGTTTTGTAGTGCGTAGGTGATTGCGCATGTATTCCAGCGATCCATGGAGGTTAGGTCGCTGGTGAACCTGACAATTATGCTACAATATCCCTGTAATAATCTTGccagtctgttattttacagacttctgTATATATTGATGTACacctaaatgtgtattttaacagtagcccctttcacacagtgataccggtaaatatctggaaaatttccggaacgactttaccggtatattcaaaaaagcgctgttcacacaggcgaggacgttacggaaattttccggaaaagagcattcacacatccatcgcaaaatgccggtaaattctgacatcattaaccagaaatgacctctaaacggctgcgcttgtgtttgtaaacatttgactacatcacaaactcttcggatggatcagtattgagtacaactctaatgaaaacatagggaaACACTTTGATATGtttgtgtgctggcgctatgggcgctcacgggcacaagcaaagcttgaaggtaaacaaacaacagattatcataaacattttattgataattatttacacagttagcattaagaaggaacatagaaacattatctgactaacatctagcagctaaaggtgtctggaaaaaatattcaaaggcttttattctcataaaccgcgtgcacgtgaatgcgtctgactgttgtgattggctaaagcagacgtctcacgtcagcccgttctagacgtggacgcgcttattacggtaatcttccttctgcattcacacagcgcagcattccggcaaattaccggtaatgttacaacttctctttccggaaaatagccagaacgaatttaccggtattttcaaaaaaggcctgttcacacatacaacctttccggaaaattgccggtaattttctggaaaggtctgtatgtgtgaaagggggcTAGTGtgtattacaaatattaattattatttatcacATCTAGAAACATACCATGATATATGTTTGCCACATGAATGTCTTTTATGTGTATGAGCTTGTAATCTCCAGTGAGTCAAATAACCTAAATGATTCTTGCTCCTGATTCATTGTCAGCCTGAGGCCCCCTAAAGAGCAATCATGTCACCATCAGCTGAGGGTCTCATTTCGGAGCCATATGTGGCATCTTCAGTCCCCCCATCAGAGTGTCGGTGTCCCCCGAGGGGCCTGTTTTCAGTGTCACAACACCTGATGTTTCCGAATGCAGCTTTCCTTCTGCTCGCTGCAGCTGTGAATAAAGGACAGCTCATTGTTTCAATAGTGTTGAATGCatgcgcacgtgtgtgtgtgtgtatgtgagaacaCAAAACTAGGAAATGACTGAGGAAACGAGTTGTGTTTGCTTAAGCCGTCAGCTGAGCTTTTATCTTGCCCTCTCTTAACCCGCGctgtttaatttagtttgatgGGCAACATTGCCAACATTGAGATGTGAGAAAGTTCAGCATCCAGCAGCTCAGGTCTGAAAGTATACTTCACCTTGAATTTGACTCCACTTCTCAACAATTTATATCTAACTTCTGCAGATGA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0008152 metabolic process biological_process
GO:0006354 DNA-templated transcription, elongation biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0008380 RNA splicing biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031975 envelope cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0003723 RNA binding molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117297

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042656 False 2503 lncRNA 0.41 2 5871506 5907979
TCONS_00042657 True 4414 lncRNA 0.40 2 5906165 5922464

Neighbor

gene id symbol gene type direction distance location
XLOC_021454 ftr57 coding upstream 128362 5736226 ~ 5743144 (+)
XLOC_021453 pkp1a coding upstream 231831 5631381 ~ 5639675 (+)
XLOC_021452 NA coding upstream 247837 5595648 ~ 5623669 (+)
XLOC_021451 smpd2a coding upstream 283572 5565261 ~ 5587934 (+)
XLOC_021450 tead3a coding upstream 313250 5499307 ~ 5558256 (+)
XLOC_021456 NAV1 coding downstream 55501 5977965 ~ 6067036 (+)
XLOC_021457 mybpha coding downstream 155039 6077503 ~ 6126003 (+)
XLOC_021458 zmp:0000001139 coding downstream 219077 6141541 ~ 6156179 (+)
XLOC_021459 syt2a coding downstream 310431 6232895 ~ 6313808 (+)
XLOC_021460 NA coding downstream 405882 6328346 ~ 6341688 (+)
XLOC_021448 NA non-coding upstream 729591 5129982 ~ 5141915 (+)
XLOC_021441 LO017700.2 non-coding upstream 1194006 4559564 ~ 4677500 (+)
XLOC_021432 NA non-coding upstream 1590399 4273916 ~ 4281107 (+)
XLOC_021427 FP102158.1 non-coding upstream 1926772 3939908 ~ 3944734 (+)
XLOC_021463 NA non-coding downstream 712621 6635085 ~ 6661864 (+)
XLOC_021466 BX005466.1 non-coding downstream 903224 6825688 ~ 6825802 (+)
XLOC_021467 NA non-coding downstream 929467 6851931 ~ 6865956 (+)
XLOC_021469 NA non-coding downstream 1282075 7204539 ~ 7206195 (+)

Expression


Co-expression Network