G207589 (LOC106561689)


Basic Information

Item Value
gene id G207589
gene name LOC106561689
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95259138 ~ 95261093 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU234974
CTCACTTCTCTATAAATTATTTtctaaataaaaacaacaacaaagtcataaaaaaaacatgtatcaaacaacatattgcacttttaaaaTGTATCCAATAAAAGAAGTAAACAAACCAAGTCAGTTTTAAAAGATGACAAACGTGTGACTGCAGGCAATAAGGAAGTCTGTCTGTAAGACCTGAAACAGAGTCCACagggtacatcccaaatggcatcctcgctatatagtgcactacaggccccatagggctctggtctaaagtagtgcactacaggccccatagggctctggtctaaagtagtgaactataaagggaatagggtgccttatGGGACACAACCATTAAAAACAATAAAGCaagatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtccatgaAGACCGATGAACATCTCCGACCATGAGACGACAGTGAGGCAACAGAACTGTGCAGGCTTGATGATTATGTTCCGTGACCAATCCACCAATCCCATCAGAGACAAGGGAGATTGAGATCCTATTGTATAATGAACAGTAAGTCAGTAACCAATCCCCTTGTCTAAAACCATCAGGCTCGATCCCACCTCTTCTGATCTTCATCACTTACAAATACACCATTCTGATGGAGTTCTGACTGAGCCCGGAGATCATTTGTTGCAGTGTGACGCTGTGGACTGCATCATCCTCTTCTGACCAATGGAAATCTTAGGAGTGAACAGGAAGTAGACTCTCGTGATATGACTTAACATTGGGAGAACCAGCATTAATCAAGGATTACAACATTCTCGGCCTTCTCATTCGTGTTATGATGTCTGTTCTTGCACCTCACATTGACTTGATATTCAGTGTTATTCTGGCTGGTGAGATTAACCAGTCAGTGACCATGTTTTCACAGACCCATTCTCCCCTACCAGACAGCACCAGGACCAACGCTATACTGAAGAACCTCCCCACTGTAGGTTCTAATCACTTATAAATATACTATTTTGATGTTCTGCGCTCTGAGATCCGCCCGGAGATAATTTGTTGCTGTGTGTGGTTGTGGACAGCATTAGGCTGACACCAGGACACTCTCCACAGCACGCTGAAAATTCTCCCAATTCCTCCAGAATAGCGCCAGCAGACACATGCCCAGGAAGGTGCCCATCACGTGGCGTCGGCTCCTCAGGAGGGGTGCGGCGAACTTGGCGGCCGTGGAGACGCACACGAGGATCACGGTGACGAGGGCGAGCATGATGTTGATGCTCTTACCCAGAAGCACCCTGGCGTCACTGGACTCGAGCTGTAcagtttgttgttgctgctgctggagCTCTAGTTTAGAGACCCGCG
>TU234976
ccctgttactttatctGGTACTTAATATAGTaaaacccccaaaaaatgtaaactCTTGAGATGgtaaaacatgtttgtttttattaagttgaacatgtgctctttatgacagaatgtaaaCATTTGTTGAAATCAAAgttttttagtttagttttttaACCAAATGACACTTCTCAGAAGTCACTGAATCGGTGGAACGACCCAACTATCACAAGATGGTAAAATAACCCTGATatcacagtgttgtagactgTCCACTCTTCTCAGCTATTCAAATGATTTATTACTACTGGAATTCCGGTAAAAGCGCATGAATAAAATCCCGTGAGATATTTGAGTTTTGTAAGAGACTGAAGAAGTGACACCGTTCACGTCTTTATATTGTCTTGATGTTTATGGAGCGATAACCTGGTGGGAATACAAACTGATAACCTCATCGGATTGATTTTGTCTCAGGCAGAAGTCTTATCACAAAACCTCAgtggcccccccacccccctcaccccaccccacccccagaCAGCACCTCCTCACTTCTCTATAAATTATTTtctaaataaaaacaacaacaaagtcataaaaaaaacatgtatcaaacaacatattgcacttttaaaaTGTATCCAATAAAAGAAGTAAACAAACCAAGTCAGTTTTAAAAGATGACAAACGTGTGACTGCAGGCAATAAGGAAGTCTGTCTGTAAGACCTGAAACAGAGTCCACagggtacatcccaaatggcatcctcgctatatagtgcactacaggccccatagggctctggtctaaagtagtgcactacaggccccatagggctctggtctaaagtagtgaactataaagggaatagggtgccttatGGGACACAACCATTAAAAACAATAAAGCaagatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtccatgaAGACCGATGAACATCTCCGACCATGAGACGACAGTGAGGCAACAGAACTGTGCAGGCTTGATGATTATGTTCCGTGACCAATCCACCAATCCCATCAGAGACAAGGGAGATTGAGATCCTATTGTATAATGAACAGTAAGTCAGTAACCAATCCCCTTGTCTAAAACCATCAGGCTCGATCCCACCTCTTCTGATCTTCATCACTTACAAATACACCATTCTGATGGAGTTCTGACTGAGCCCGGAGATCATTTGTTGCAGTGTGACGCTGTGGACTGCATCATCCTCTTCTGACCAATGGAAATCTTAGGAGTGAACAGGAAGTAGACTCTCGTGATATGACTTAACATTGGGAGAACCAGCATTAATCAAGGATTACAACATTCTCGGCCTTCTCATTCGTGTTATGATGTCTGTTCTTGCACCTCACATTGACTTGATATTCAGTGTTATTCTGGCTGGTGAGATTAACCAGTCAGTGACCATGTTTTCACAGACCCATTCTCCCCTACCAGACAGCACCAGGACCAACGCTATACTGAAGAACCTCCCCACTGTAGGTTCTAATCACTTATAAATATACTATTTTGATGTTCTGCGCTCTGAGATCCGCCCGGAGATAATTTGTTGCTGTGTGTGGTTGTGGACAGCATTAGGCTGACACCAGGACACTCTCCACAGCACGCTGAAAATTCTCCCAATTCCTCCAGAATAGCGCCAGCAGACACATGCCCAGGAAGGTGCCCATCACGTGGCGTCGGCTCCTCAGGAGGGGTGCGGCGAACTTGGCGGCCGTGGAGACGCACACGAGGATCACGGTGACGAGGGCGAGCATGATGTTGATGCTCTTACCCAGAAGCACCCTGGCGTCACTGGACTCGAGCTGTAcagtttgttgttgctgctgctggagCTCTAGTTTAGAGACCCGCG
>TU234977
aaaacatgtttgtttttattaagttgaacatgtgctctttatgacagaatgtaaaCATTTGTTGAAATCAAAgttttttagtttagttttttaACCAAATGACACTTCTCAGAAGTCACTGAATCGGTGGAACGACCCAACTATCACAAGATGGTAAAATAACCCTGATatcacagtgttgtagactgTCCACTCTTCTCAGCTATTCAAATGATTTATTACTACTGGAATTCCGGTAAAAGCGCATGAATAAAATCCCGTGAGATATTTGAGTTTTGTAAGAGACTGAAGAAGTGACACCGTTCACGTCTTTATATTGTCTTGATGTTTATGGAGCGATAACCTGGTGGGAATACAAACTGATAACCTCATCGGATTGATTTTGTCTCAGGCAGAAGTCTTATCACAAAACCTCAgtggcccccccacccccctcaccccaccccacccccagaCAGCACCTCCTCACTTCTCTATAAATTATTTtctaaataaaaacaacaacaaagtcataaaaaaaacatgtatcaaacaacatattgcacttttaaaaTGTATCCAATAAAAGAAGTAAACAAACCAAGTCAGTTTTAAAAGATGACAAACGTGTGACTGCAGGCAATAAGGAAGTCTGTCTGTAAGACCTGAAACAGAGTCCACagggtacatcccaaatggcatcctcgctatatagtgcactacaggccccatagggctctggtctaaagtagtgcactacaggccccatagggctctggtctaaagtagtgaactataaagggaatagggtgccttatGGGACACAACCATTAAAAACAATAAAGCaagatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtccatgaAGACCGATGAACATCTCCGACCATGAGACGACAGTGAGGCAACAGAACTGTGCAGGCTTGATGATTATGTTCCGTGACCAATCCACCAATCCCATCAGAGACAAGGGAGATTGAGATCCTATTGTATAATGAACAGTAAGTCAGTAACCAATCCCCTTGTCTAAAACCATCAGGCTCGATCCCACCTCTTCTGATCTTCATCACTTACAAATACACCATTCTGATGGAGTTCTGACTGAGCCCGGAGATCATTTGTTGCAGTGTGACGCTGTGGACTGCATCATCCTCTTCTGACCAATGGAAATCTTAGGAGTGAACAGGAAGTAGACTCTCGTGATATGACTTAACATTGGGAGAACCAGCATTAATCAAGGATTACAACATTCTCGGCCTTCTCATTCGTGTTATGATGTCTGTTCTTGCACCTCACATTGACTTGATATTCAGTGTTATTCTGGCTGGTGAGATTAACCAGTCAGTGACCATGTTTTCACAGACCCATTCTCCCCTACCAGACAGCACCAGGACCAACGCTATACTGAAGAACCTCCCCACTGTAGGTTCTAATCACTTATAAATATACTATTTTGATGTTCTGCGCTCTGAGATCCGCCCGGAGATAATTTGTTGCTGTGTGTGGTTGTGGACAGCATTAGGCTGACACCAGGACACTCTCCACAGCACGCTGAAAATTCTCCCAATTCCTCCAGAATAGCGCCAGCAGACACATGCCCAGGAAGGTGCCCATCACGTGGCGTCGGCTCCTCAGGAGGGGTGCGGCGAACTTGGCGGCCGTGGAGACGCACACGAGGATCACGGTGACGAGGGCGAGCATGATGTTGATGCTCTTACCCAGAAGCACCCTGGCGTCACTGGACTCGAGCTGTAcagtttgttgttgctgctgctggagCTCTAGTTTAGAGACCCGCG

Function

NR:

description
PREDICTED: transmembrane and coiled-coil domains protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234974 False 1353 lncRNA 0.46 2 95259138 95260564
TU234976 False 1882 lncRNA 0.44 2 95259138 95261093
TU234977 True 1817 lncRNA 0.44 2 95259138 95261028

Neighbor

gene id symbol gene type direction distance location
LOC110502417 LOC106561684 coding downstream 134591 95097379 ~ 95124547 (-)
LOC110500368 LOC105021811 coding downstream 238709 95015675 ~ 95020429 (-)
trnay-gua NA coding downstream 249447 95009602 ~ 95009691 (-)
LOC110500345 LOC106561680 coding downstream 284225 94959918 ~ 94974913 (-)
LOC110500320 LOC106604557 coding downstream 477770 94777558 ~ 94781368 (-)
LOC118944198 NA coding upstream 10000 95271093 ~ 95271272 (-)
parietopsin LOC106561711 coding upstream 367356 95628449 ~ 95632062 (-)
LOC110502485 LOC106561707 coding upstream 374803 95635896 ~ 95664503 (-)
LOC110500466 nampt coding upstream 442266 95703359 ~ 95721115 (-)
LOC110533932 NA coding upstream 621038 95882131 ~ 95883679 (-)
G207575 NA non-coding downstream 18252 95240523 ~ 95240886 (-)
G207524 NA non-coding downstream 58484 95154198 ~ 95200654 (-)
G207533 NA non-coding downstream 84712 95173288 ~ 95174426 (-)
G207519 NA non-coding downstream 111262 95147490 ~ 95147876 (-)
G207517 NA non-coding downstream 116323 95141941 ~ 95142815 (-)
G207592 NA non-coding upstream 6429 95267522 ~ 95267990 (-)
G207593 NA non-coding upstream 7213 95268306 ~ 95279187 (-)
G207836 NA non-coding upstream 35481 95296574 ~ 95296959 (-)
G207869 LOC106561691 non-coding upstream 74169 95335262 ~ 95347544 (-)
G207867 NA non-coding upstream 95115 95356208 ~ 95359859 (-)
G207340 LOC105021815 other downstream 482782 94762662 ~ 94776356 (-)
G207249 NA other downstream 629399 94629437 ~ 94629739 (-)
G207244 LOC100194703 other downstream 641906 94616915 ~ 94617232 (-)
G206750 NA other downstream 930955 94327910 ~ 94328183 (-)
G206744 LOC106561643 other downstream 945220 94313390 ~ 94313918 (-)
G207858 LOC106561692 other upstream 116630 95377723 ~ 95408714 (-)
G207959 NA other upstream 262875 95523968 ~ 95524227 (-)
G207884 NA other upstream 343135 95604228 ~ 95609786 (-)
G207876 LOC106561706 other upstream 420944 95680851 ~ 95686864 (-)
G208077 NA other upstream 568281 95829374 ~ 95832362 (-)

Expression


Co-expression Network