XLOC_021457 (mybpha)


Basic Information

Item Value
gene id XLOC_021457
gene name mybpha
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 6077503 ~ 6126003 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042660
GTGAATTATTCCAGTGTTGATAAGAGCAGATTCATCAATCTGAGGGCTATTTAAAGCAGAGGAGGAGTCCCCCACACTCTCACGGGCGCTATAAATTCAACTGATGTTTCAAAGCGCAGCAACCCTGTTGAGTTTTCCCCAAGCATCATGCCAGCCAAACCAGCACCCATCAAAAAGTCAGCCAAGAAGGCTGCTGAGAAAGAGGAAAAGCCCGCAGCGCCGGCGCCCGTGCCCGAGACCGCTCCGGTGGAGGCGCCTCCTGCTGAAGATCCGCCGGTAGAAGCTGCAGCTCCAGCGGCCGTGGAGGAAACTACACCCGCTCCAGAGGCACCTGTTGCTGAAGCTGCTCCTGCTGAACCTGCACCTGTAGAAGAGCCACCAAAAGCACCTACACCACCTCCTCCAGCAGTTCCCCCTAGTGCCCCTCAAGGCCTCAGTGTGGACGATGTCAACGATACCTCAGTCACTCTGAAGTGGAGATCCCCAGAGAACATTGGCTCTGGGCTGGATGGATACGCCGTGGAATACTGCAAGGAAGGATCTTCTGAATGGGTGGTTGCCAATACCGAGCTTGTCACTTCCAACCGGCATGCCATCAGAGGACTGACAACTGGGGACATGCTTAACATCCGTGTGGTGGCTGTGAATGCTGGAGGCCGCAGTGAGCCTGTTGTCCTGCCTCAGCCCATACCAGTCCGAGAGGTCATGGATCGGCCCAGGATCCGCATGCCCCGTGCCCTGAGGTCCAAATACATCAGGCATGCTGGAGAACAGATCAATCTTGTCATCCCGTTCAGTGGCAAACCTAAACCTGTCATATCATGGACCAAGAATGGCCAGCCTTTGGATACGAAGAAGGTGAATGTCCGAAACAGCGACAAGGATAGCATTCTGTTTATCCGCAAGGCTGAGAGAGATGATTCAGGCAGCTATGAGATGAGTGTAAAGGTCGACAGCTTCGAGGACAAGACTACCCTCATAATTCAGATTGTCGATCTGCCCGGTCCTCCAGTCTCGGTCAAGCTCGTGGACTCTTGGGGCTTCAATGCAGCTCTGGAATGGACTCCACCTAAAGACAACGGCAATACTGAGATCACAGGATACACCGTTCAGAAGGCTGACAAGAAAACTggaGAGTGGTTCACGGTTCTGGAGCACTTCCACAGGCTTAACGTTACTGTCACTGACCTTGTGATGGGAAATGTATACACCTTCAGGGTTTTTTCTGAAAACATGGTCGGAAGGAGTGAGACTGCCGCTGTTACAAAGGATGCTGCTCGTATTAAGAAAACAGGTATTGTCTACAAGCCACTTGAGTACAAGGAACATGATTTCAGCGAGGCTCCCAAGTTCACAGCCCCCCTCAAAGACAGAGCTGCCACTGTGGGCTACACCGCCAAACTACTGTGTGCAGTCCGAGGCAGTCCAAAGCCCAAGATCGAGTGGCTGAAGAACCAGATGCTCCTAGGAGATGATCCCAAATTCAGGCAGATCAACAACCAAGGAGTGTGCTCTCTCGAAATCCGCAAACCATCCAGCTTTGACGGCGGCGTCTACACTTGCAGGGCCAAGAATGCTCTCGGAGAGGCTACAGTTGCCTGTAAGCTGGAGGTCAAACAGGTGACAATCCAAGAGGAAAAAGACAAGAAATAAGTGGATGTGCACAGTTCTCTTGTTAAGGAGCAGCAGGACACgatgtgaaataaaactaaacaaagATGTTTACAGTCGTGCTGGAGGATGAGCTGTTGTGTGCACAATAACACAGTCTCAGCATTCTCAACAAAGACTCAACAAAACACATGAAACAAAGGATAGTTTTCTGTTTTTCTAGAAAAGCTACAGCGCCATGTTAGTTATGGCCTAAAAatagaatttttagttttgtattCCTTGCATGTATTAGTTGTCTGTTCCTGTTTCTTACTGATGAAATCTTTCACTGTCCTTGAGAATACAGTAAGCACACTGTTCTTGCAAcaatataaaatgtacaaaattagcATACTGTGCTTTTCATGTTTTAATTAGATATATTTtgcagtaaacaaaaacaaaaatagtcttattttatgtgaaattgtatgtaaaatcatatttaaaatgtgcttttaaacagGCCTTTGTGTTAAACAGATATTGTAGGCACTGGTCTGTTTGTAATAAACCAGCAAGATGGTTGAACTAATAGTCATGAAGGGTATATTTAAGTAGATGACATGTGGTCTTCACAGCCCATGTACAGGTTTTAAATAGATTTGTAAACAGCCTTTAACTGACGCCCTCACCAAATAAACCTCAGATAAAACCTG
>TCONS_00042661
AGAGGAGGAGTCCCCCACACTCTCACGGGCGCTATAAATTCAACTGATGTTTCAAAGCGCAGCAACCCTGTTGAGTTTTCCCCAAGCATCATGCCAGCCAAACCAGCACCCATCAAAAAGTCAGCCAAGAAGGCTGCTGAGAAAGAGGAAAAGCCCGCAGCGCCGGCGCCCGTGCCCGAGACCGCTCCGGTGGAGGCGCCTCCTGCTGAAGATCCGCCGGTAGAAGCTGCAGCTCCAGCGGCCGTGGAGGAAACTACACCCGCTCCAGAGGCACCTGTTGCTGAAGGCCCTGCTGAAGAAACTGCTCCTGCCGCTGATGCTCCAGCTGAGGCTGCTCCTGCTGAACCTGCACCTGTAGAAGAGCCACCAAAAGCACCTACACCACCTCCTCCAGCAGTTCCCCCTAGTGCCCCTCAAGGCCTCAGTGTGGACGATGTCAACGATACCTCAGTCACTCTGAAGTGGAGATCCCCAGAGAACATTGGCTCTGGGCTGGATGGATACGCCGTGGAATACTGCAAGGAAGGATCTTCTGAATGGGTGGTTGCCAATACCGAGCTTGTCACTTCCAACCGGCATGCCATCAGAGGACTGACAACTGGGGACATGCTTAACATCCGTGTGGTGGCTGTGAATGCTGGAGGCCGCAGTGAGCCTGTTGTCCTGCCTCAGCCCATACCAGTCCGAGAGGTCATGGATCGGCCCAGGATCCGCATGCCCCGTGCCCTGAGGTCCAAATACATCAGGCATGCTGGAGAACAGATCAATCTTGTCATCCCGTTCAGTGGCAAACCTAAACCTGTCATATCATGGACCAAGAATGGCCAGCCTTTGGATACGAAGAAGGTGAATGTCCGAAACAGCGACAAGGATAGCATTCTGTTTATCCGCAAGGCTGAGAGAGATGATTCAGGCAGCTATGAGATGAGTGTAAAGGTCGACAGCTTCGAGGACAAGACTACCCTCATAATTCAGATTGTCGATCTGCCCGGTCCTCCAGTCTCGGTCAAGCTCGTGGACTCTTGGGGCTTCAATGCAGCTCTGGAATGGACTCCACCTAAAGACAACGGCAATACTGAGATCACAGGATACACCGTTCAGAAGGCTGACAAGAAAACTggaGAGTGGTTCACGGTTCTGGAGCACTTCCACAGGCTTAACGTTACTGTCACTGACCTTGTGATGGGAAATGTATACACCTTCAGGGTTTTTTCTGAAAACATGGTCGGAAGGAGTGAGACTGCCGCTGTTACAAAGGATGCTGCTCGTATTAAGAAAACAGGTATTGTCTACAAGCCACTTGAGTACAAGGAACATGATTTCAGCGAGGCTCCCAAGTTCACAGCCCCCCTCAAAGACAGAGCTGCCACTGTGGGCTACACCGCCAAACTACTGTGTGCAGTCCGAGGCAGTCCAAAGCCCAAGATCGAGTGGCTGAAGAACCAGATGCTCCTAGGAGATGATCCCAAATTCAGGCAGATCAACAACCAAGGAGTGTGCTCTCTCGAAATCCGCAAACCATCCAGCTTTGACGGCGGCGTCTACACTTGCAGGGCCAAGAATGCTCTCGGAGAGGCTACAGTTGCCTGTAAGCTGGAGGTCAAACAGGTGACAATCCAAGAGGAAAAAGACAAGAAATAAGTGGATGTGCACAGTTCTCTTGTTAAGGAGCAGCAGGACACgatgtgaaataaaactaaacaaagATGTTTACAGTCGTGCTGGAGGATGAGCTGTTGTGTGCACAATAACACAGTCTCAGCATTCTCAACAAAGACTCAACAAAACACATGAAACAAAGGATAGTTTTCTGTTTTTCTAGAAAAGCTACAGCGCCATGTTAGTTATGGCCTAAAAatagaatttttagttttgtattCCTTGCATGTATTAGTTGTCTGTTCCTGTTTCTTACTGATGAAATCTTTCACTGTCCTTGAGAATACAGTAAGCACACTGTTCTTGCAAcaatataaaatgtacaaaattagcATACTGTGCTTTTCATGTTTTAATTAGATATATTTtgcagtaaacaaaaacaaaaatagtcttattttatgtgaaattgtatgtaaaatcatatttaaaatgtgcttttaaacagGCCTTTGTGTTAAACAGATATTGTAGGCACTGGTCTGTTTGTAATAAACCAGCAAGATGGTTGAA
>TCONS_00042662
AACCCTGTTGAGTTTTCCCCAAGCATCATGCCAGCCAAACCAGCACCCATCAAAAAGTCAGCCAAGAAGGCTGCTGAGAAAGAGGAAAAGCCCGCAGCGCCGGCGCCCGTGCCCGAGACCGCTCCGGTGGAGGCGCCTCCTGCTGAAGATCCGCCGGTAGAAGCTGCAGCTCCAGCGGCCGTGGAGGAAACTACACCCGCTCCAGAGGCACCTGTTGCTGAAGCTGCTCCTGCTGAACCTGCACCTGTAGAAGAGCCACCAAAAGCACCTACACCACCTCCTCCAGCAGTTCCCCCTAGTGCCCCTCAAGGCCTCAGTGTGGACGATGTCAACGATACCTCAGTCACTCTGAAGTGGAGATCCCCAGAGAACATTGGCTCTGGGCTGGATGGATACGCCGTGGAATACTGCAAGGAAGGATCTTCTGAATGGGTGGTTGCCAATACCGAGCTTGTCACTTCCAACCGGCATGCCATCAGAGGACTGACAACTGGGGACATGCTTAACATCCGTGTGGTGGCTGTGAATGCTGGAGGCCGCAGTGAGCCTGTTGTCCTGCCTCAGCCCATACCAGTCCGAGAGGTCATGGATCGGCCCAGGATCCGCATGCCCCGTGCCCTGAGGTCCAAATACATCAGGCATGCTGGAGAACAGATCAATCTTGTCATCCCGTTCAGTGTAAGTTTAGATTTGTATATCAAGGGTTAATGGTTACTTTTTTCCACAATAAGTTTGTTTGcccctaaagggatagttcacccatttatttattttagataccCTCTACTAGTTCCACACCTgttagagtttctttcttctattgagcATAAATAATATTTAGACGGATGCTACTGGCTTCTTTTTTATCTTCTATGGATGTCAGAttctaccagtttccaacatttatcaaaataaatttagtagaaagaaacttataaaagttTGAAACATTTTGAAT

Function

symbol description
mybpha Is expressed in hypaxial myotome region; musculature system; myotome; pectoral fin; and somite. Orthologous to several human genes including MYBPH (myosin binding protein H).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1531 Is expressed in hypaxial myotome region; musculature system; myotome; pectoral fin; and somite. Orthologous to several human genes including MYBPH (myosin binding protein H).

Ensembl:

ensembl_id ENSDARG00000058799

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042660 False 2312 mRNA 0.47 13 6077503 6126003
TCONS_00042661 False 2172 mRNA 0.48 14 6077560 6125875
TCONS_00042662 True 958 lncRNA 0.50 5 6077623 6096483

Neighbor

gene id symbol gene type direction distance location
XLOC_021456 NAV1 coding upstream 10467 5977965 ~ 6067036 (+)
XLOC_021455 CABZ01026153.1 coding upstream 155039 5871506 ~ 5922464 (+)
XLOC_021454 ftr57 coding upstream 334359 5736226 ~ 5743144 (+)
XLOC_021453 pkp1a coding upstream 437828 5631381 ~ 5639675 (+)
XLOC_021452 NA coding upstream 453834 5595648 ~ 5623669 (+)
XLOC_021458 zmp:0000001139 coding downstream 15538 6141541 ~ 6156179 (+)
XLOC_021459 syt2a coding downstream 106892 6232895 ~ 6313808 (+)
XLOC_021460 NA coding downstream 202343 6328346 ~ 6341688 (+)
XLOC_021461 spo11 coding downstream 418450 6544453 ~ 6574123 (+)
XLOC_021462 rbm38 coding downstream 460464 6586467 ~ 6632106 (+)
XLOC_021448 NA non-coding upstream 935588 5129982 ~ 5141915 (+)
XLOC_021441 LO017700.2 non-coding upstream 1400003 4559564 ~ 4677500 (+)
XLOC_021432 NA non-coding upstream 1796396 4273916 ~ 4281107 (+)
XLOC_021463 NA non-coding downstream 509082 6635085 ~ 6661864 (+)
XLOC_021466 BX005466.1 non-coding downstream 699685 6825688 ~ 6825802 (+)
XLOC_021467 NA non-coding downstream 725928 6851931 ~ 6865956 (+)
XLOC_021469 NA non-coding downstream 1078536 7204539 ~ 7206195 (+)

Expression


Co-expression Network