XLOC_021459 (syt2a)


Basic Information

Item Value
gene id XLOC_021459
gene name syt2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 6232895 ~ 6313808 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042664
gtgtagtgctgCAGTAACGAGTGGAGAGGGGGGATGACTGCAGTTTCTCGGGCTGATGGAAGAGCGCGAGCAGGAGACGTTCGCACACCACTGAAACATTAACCCCTAAGTGCCTCGCTGGTGTATGGCCCAGACACTCACTGAGGATTAGCACCGAGGAGATCACTGCAGTCAGGGTTTCTGTTGGTGTAGGCATCAAGCATGAAGTGGAATGTGTTGAAGAAGAAGCCGGCGGCCATGGTGGGACCTGAGCCAACCGGTGCCAGTGCCCTGACAATGGCCCCTGCTGTTTCTACACCTGCAGACAACTCCACCGAGCACCAGGGTCCAGTCAGCAAGAATGACGTGTTTGGTGACATCAAAAACAAGTTCCTCAATGAGATGGACAAGCTTCCACTTCCTCCCTGGGCTATCATCGCCATTGCTATCGTTGCTGTGGTCCTCATTCTTACATGCTGTTTCTGCATCGTAAAAAAGACCTGCCTAAAGAAGAAAAAAGGCAAGAAGGGAAAGAAAGGCAAAGGTGACATGGGAATGAAGAACATGAAGGGAGGAGAGAAACAGGAAGAGGATGACGATGAAGAAGATATAGACATGGGAATTACTGAAGAGAAGGAGGAGGAACCTAAAGAGAAAGAGAAGCTGGGCAAACTGCAGTTCTCCCTGGACTATGATTTCTCTGCAAGTCAGCTGACAGTGGGCATCCTGCAAGCTGCTGATCTTCTGTCCATGGACAGTGGCGGCACCTCAGACCCATACGTTAAAGTTTTCATCCTCCCAGACAAGAAGAAGAAGTATGACACCAAGGTGCACAAGAAAACCCTCAACCCTGTCTTCAACGAAACTTTCCATTTTAAGATTCCCTTCACTGAAATGGGAGGAAAGACTCTGGTCATGTCTGTGTATGACTTTGACCGTTTCTCGAAGCATGATGTGATCGGTGAGGTAAAGATTCCAATGAACACCCTTGATCTGGCACAACCTATTGAGCAGTGGAGAGACCTGGACAGCGCAGAGAAAGAAGAGCCTGAAAAGCTTGGAGATATCTGCATCTCTCTGCGCTATGTACCTACAGCTGGAAAACTCACCATCTGTATCCTGGAGGCGAAGAACCTAAAAAAGATGGATGTGGGGGGACTCtcagATCCCTATGTGAAGATACATCTTCTGCAAAATGGGAAACgactgaagaagaagaagacaactGTGAAGAAGAACACCCTGAACCCTTACTACAACGAGTCCTTCAGCTTTGAGATCCCACAGGACCAGATGCAGAAAATACAAGCTGTGATCACAGTGCTCGATTACGATAAGATCGGCAAGAACGATGCCATCGGGAAGATCTGGGTGGGCAGTAAAGCGCAGGGCACCGAGCTCCGGCACTGGTCCGACATGCTGGCCAACCCACGCAGGCCCATCGCTCAGTGGCATCCACTCAAACCCGAAGAAGAGGTGGACGCCACGTTAGCAGCGCTCACTGCCAAGAAGTAAACCCGCTcctcctccctccctccctccctccctcctctCCTTTATTCACTTTTCAACATGCACAACACGTCATCAAATCCCCCAATCAGCACTGAATTACAGCCACGGGCCACCAGACTGAAGGTGTTAAAGAAGACGATTCGGTCTCATCAGCGGCTAAAACGAGATGAGGGTGAACCGAGAGAGACTGTTTCCACAGATGTTCTTGAAGGAGGGCCGGGCTCGTAGGTGCGGTTATTACACATATAAGCTCCCATTCACACCTTAAAACATCCAACAGCATTCCAAAGTTTTCCATCGGGGACCAGGGATAGAAAACACTGCCTCTTCCACTGCCTAATTTAACACATTCCTTCTAGATTATCTCTGGTCATCTAGATGAAATCAGTTCTGTTCTGTTTGCCGTGTCTGAAAAGACAGTAAagagtaattgaaaaaaaaaatgaatatagaAAAA
>TCONS_00042665
ATGAAGTGGAATGTGTTGAAGAAGAAGCCGGCGGCCATGGTGGGACCTGAGCCAACCGGTGCCAGTGCCCTGACAATGGCCCCTGCTGTTTCTACACCTGCAGACAACTCCACCGAGCACCAGGGTCCAGTCAGCAAGAATGACGTGTTTGGTGACATCAAAAACAAGTTCCTCAATGAGATGGACAAGCTTCCACTTCCTCCCTGGGCTATCATCGCCATTGCTATCGTTGCTGTGGTCCTCATTCTTACATGCTGTTTCTGCATCGTAAAAAAGACCTGCCTAAAGAAGAAAAAAGGCAAGAAGGGAAAGAAAGGCAAAGGTGACATGGGAATGAAGAACATGAAGGGAGGAGAGAAACAGGAAGAGGATGACGATGAAGAAGATATAGACATGGGAATTACTGAAGAGAAGGAGGAGGAACCTAAAGAGAAAGAGAAGCTGGGCAAACTGCAGTTCTCCCTGGACTATGATTTCTCTGCAAGTCAGCTGACAGTGGGCATCCTGCAAGCTGCTGATCTTCTGTCCATGGACAGTGGCGGCACCTCAGACCCATACGTTAAAGTTTTCATCCTCCCAGACAAGAAGAAGAAGTATGACACCAAGGTGCACAAGAAAACCCTCAACCCTGTCTTCAACGAAACTTTCCATTTTAAGATTCCCTTCACTGAAATGGGAGGAAAGACTCTGGTCATGTCTGTGTATGACTTTGACCGTTTCTCGAAGCATGATGTGATCGGTGAGGTAAAGATTCCAATGAACACCCTTGATCTGGCACAACCTATTGAGCAGTGGAGAGACCTGGACAGCGCAGAGAAAGAAGAGCCTGAAAAGCTTGGAGATATCTGCATCTCTCTGCGCTATGTACCTACAGCTGGAAAACTCACCATCTGTATCCTGGAGGCGAAGAACCTAAAAAAGATGGATGTGGGGGGACTCtcagATCCCTATGTGAAGATACATCTTCTGCAAAATGGGAAACgactgaagaagaagaagacaactGTGAAGAAGAACACCCTGAACCCTTACTACAACGAGTCCTTCAGCTTTGAGATCCCACAGGACCAGATGCAGAAAATACAAGCTGTGATCACAGTGCTCGATTACGATAAGATCGGCAAGAACGATGCCATCGGGAAGATCTGGGTGGGCAGTAAAGCGCAGGGCACCGAGCTCCGGCACTGGTCCGACATGCTGGCCAACCCACGCAGGCCCATCGCTCAGTGGCATCCACTCAAACCCGAAGAAGAGGTGGACGCCACGTTAGCAGCGCTCACTGCCAAGAAGTAA
>TCONS_00042666
ttttgaggcaggaaacggcggacgtgcaacaactttaactatgagTTCCTCCCTGGGCTATCATCGCCATTGCTATCGTTGCTGTGGTCCTCATTCTTACATGCTGTTTCTGCATCGTAAAAAAGACCTGCCTAAAGAAGAAAAAAGGCAAGAAGGGAAAGAAAGGCAAAGGTGACATGGGAATGAAGAACATGAAGGGAGGAGAGAGAAACAGGAAGAGGATGACGATGAAGAAGATATAGACATGGGAATTACTGAAGAGAAGGAGGAGGAACCTAAAGAGAAAGAGAAGCTGGGCAAACTGCAGTTCTCCCTGGACTATGATTTCTCTGCAAGTCAGCTGACAGTGGGCATCCTGCAAGCTGCTGATCTTCTGTCCATGGACAGTGGCGGCACCTCAGACCCATACGTTAAAGTTTTCATCCTCCCAGACAAGAAGAAGAAGTATGACACCAAGGTGCACAAGAAAACCCTCAACCCTGTCTTCAACGAAACTTTCCATTTTAAGATTCCCTTCACTGAAATGGGAGGAAAGACTCTGGTCATGTCTGTGTATGACTTTGACCGTTTCTCGAAGCATGATGTGATCGGTGAGGTAAAGATTCCAATGAACACCCTTGATCTGGCACAACCTATTGAGCAGTGGAGAGACCTGGACA

Function

symbol description
syt2a Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and synaptic vesicle cycle. Predicted to act upstream of or within neurotransmitter secretion. Predicted to be located in chromaffin granule membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in axon; plasma membrane; and secretory vesicle. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 7. Orthologous to human SYT2 (synaptotagmin 2).

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0017158 regulation of calcium ion-dependent exocytosis biological_process
GO:0014059 regulation of dopamine secretion biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030424 axon cellular_component
GO:0031045 dense core granule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0001786 phosphatidylserine binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0030276 clathrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-315 Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and synaptic vesicle cycle. Predicted to act upstream of or within neurotransmitter secretion. Predicted to be located in chromaffin granule membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in axon; plasma membrane; and secretory vesicle. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 7. Orthologous to human SYT2 (synaptotagmin 2).

Ensembl:

ensembl_id ENSDARG00000025206

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042664 False 1951 mRNA 0.49 9 6232895 6313808
TCONS_00042665 False 1293 mRNA 0.49 8 6272638 6313351
TCONS_00042666 True 659 processed_transcript 0.46 5 6277175 6304274

Neighbor

gene id symbol gene type direction distance location
XLOC_021458 zmp:0000001139 coding upstream 76716 6141541 ~ 6156179 (+)
XLOC_021457 mybpha coding upstream 106892 6077503 ~ 6126003 (+)
XLOC_021456 NAV1 coding upstream 165859 5977965 ~ 6067036 (+)
XLOC_021455 CABZ01026153.1 coding upstream 310431 5871506 ~ 5922464 (+)
XLOC_021454 ftr57 coding upstream 489751 5736226 ~ 5743144 (+)
XLOC_021460 NA coding downstream 14538 6328346 ~ 6341688 (+)
XLOC_021461 spo11 coding downstream 230645 6544453 ~ 6574123 (+)
XLOC_021462 rbm38 coding downstream 272659 6586467 ~ 6632106 (+)
XLOC_021463 NA coding downstream 321277 6635085 ~ 6661864 (+)
XLOC_021464 P4HTM coding downstream 439020 6752828 ~ 6789033 (+)
XLOC_021452 NA non-coding upstream 609226 5595648 ~ 5623669 (+)
XLOC_021448 NA non-coding upstream 1090980 5129982 ~ 5141915 (+)
XLOC_021441 LO017700.2 non-coding upstream 1555395 4559564 ~ 4677500 (+)
XLOC_021432 NA non-coding upstream 1951788 4273916 ~ 4281107 (+)
XLOC_021466 BX005466.1 non-coding downstream 511880 6825688 ~ 6825802 (+)
XLOC_021467 NA non-coding downstream 538123 6851931 ~ 6865956 (+)
XLOC_021469 NA non-coding downstream 890731 7204539 ~ 7206195 (+)

Expression


Co-expression Network