XLOC_021460


Basic Information

Item Value
gene id XLOC_021460
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 6328346 ~ 6341688 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044776
AAGTAATAACATTTTAATCGGCTGCCCTAGAAAGACGGAAGTAGTACAGTAGAAGTGTACAATAGTAGCTGTGTACAACTATGCCAAGGAACACATTCCTGCAAAACACATGAGCTTGATATAATAGATGTGATGATGACGCAGGCAGACAGAGGGCAGCATAGCACCTAAAATAAAGAAAGCACTTGACTTGTAGTTTACAGTGTGTTTTTAATAATAGTAACACGCTAACAACAAAGAACAAACACAATCATAAACAAAGTGCTGTGAGCATTGGTTCAAGAATACAGGTTACAAACGGTGGACAATGAAAATAAACACAGCATTTCAAATGGCATATTGTGTGTGGTGTTTGTTTGATCCATATAGTTGCTCTTAGTTACACACAaaggcataaataaatataaacacaacaatggTATCATGTATCTATTCTTCAGCCTTTTGGTTCATATATAAACACTGCGAGCGTAAAAGTAAACAGGACAGATGTGTTGATATGAAGCGAGTTAAAAGAGAGTGACGTCGTCTCTCAGTGGGAACATTCCTTTTAGAATATTCTGGCAGAGCTTCTGAGGACCCGACTGGACTATATTAGGCCAACGACTGCTTCAGGACAGTTCGGTTTGATTTATGGTCAAATACTGTTCAAAGGAATGGCAGTTTGCACAGCTCTTCCCTGCTGAAATGACCAGAGCAGTTGGTGACCGGTGCTGTGGTTTGGACGCTTGCCCATAGATAATAGTGTGCTGGTGTTCCCACAAGACTTCCTAACAAGTTTACCATCTTAGGAGTGTGAGGAGGTTTGGCAGCAGAGTCATGGATGGCTTTAGCACTGGGTAGATGGAAGCAACTTATTCTAAGAACCTAGTTATCGATCATGTCACCTGAAAGGTTTTCCCCAGTCTCAAATTCCTGATTGTATTCGACCATCactaccctagtagcaaagaattctggcccagatttggcaaaaagctggcacagcaggcattcatccagcactggcatacagcctgtgggccaaacatggcccgggtttggcagaggtggcaccgtttttaaggcggcacacaagatttgggccagatgaaaaacgtagtatttggcccagatttaaaaatttgataagtgggccatgtgagtttggccagtcttgacccacatttaaaatacactaaaatcatttttgagtaaagaaaaaaaattctaccaatcaggtcactttgagaaaaagcgtgcccatagtgtgcctaaagcgcatcactccatgggtttatcaatttcattgtaaTCGtcacacaccaacctatctggcccagttcaggcccagttataagttattaacttggcccagatatggtctgtgtttggcccttgtctggaagccagatttggtccagttatgtaccgtaattcactgcggcatgtgggccaagcaaaacctgattgtgtgggccagagctgggccagagaaattttgctatgtgggtagaaACTCTAAAATGACAACCAACGATGACAACAAGTATGGTACCGCACAAAATCAACAAGTGGAGGACAGAGGATGACATAATTAAAGTGTCATGATTAATGTGTGGGTTTTGTGATAATAGAGTTGGAATTACATGTGTAATGTAACTAAAGTTGCAAAACAAATGGACTAAGAGACAAAAATCACCCTTAAATACTTGAACTGGTgcatatccagcctgatctcacgagaaaacgttaCGTTTTggcaatttagtggctaatatgTACAAATTCGtgtgagttcagtcgtacaaaactgtttgattttaaaaaggaggcgtggcacccaaccccacccctaaacccaaccgtcattgggggatgagcaaatcgtactaaattgtacgaattagatcgtacgaattcatgcgaattagccactaaatcaaaaagttacgaattgccgtgagattgtgttggcataTCATTGGTGTTGAGCATAGATATagacactagatatcgcatacggaccctgagcatgcgtcaatagcgccgccacattggtacagtgctcccaggacaaatgtcatttaacTGCACTAGGAGTTAAAGCACAAAGGGAAAACATTTCATAGggaagatttgtttttttttttatgcttttgcatggtatgaacttttgtgctaaacaggtaacgttattgatgataatagtcACTGCATTCGCCagaaggcaaagtagcaccaacttgcactgaATACTTGGCTTTTGCTAGTTTTGTTGagtaaaatcagcaaacaatgcaatagaaatatgacaaagagatgctgcggtgccagaaacttgtattattgtcggctaagggaaggagtcgttcataatggagaATCATTCACAAAGAAATCGCTCCCTCTGccagaatgagaagtgaaaggaGGAGaagaggtgtgtttcaggacatggattataGATCAAAtctaacagggagggtgaatagtacatttccattcacacaaacacacacatttatccaTTAATGTACTGTAGAAATGTGAtgtgaaattataatttttgaaataaaaaagaaaattgcatAATGACCTCGGGGAAAActtcccgatcatagatatatgtgtatatgtttatatctctggctctggatggccacagtcctccactgcagcttggtcctgcaattatttcaaaggagcgctaccctgtactaaaatggcgacTCTATCtatgcattccttccaatagacaacaacagggtaggtgacatctaatgtatatatctatggatgtTGAGTAAAAATGAACCGATTAGCATTCTTTATGCTAACATCTTGTAACACTTTAAAGTGGTGTTTTTATGAAACATACTGTGTTCAATGAATCAGCATAAAAAGTCGCTGTAGTTCCTATTGTGCTGGATTACACCATGCTGAAATAGTAGCCCACTCTCATTAATAAAGATAGAAAACCTTTCAATGAAAAGGTACTTTTGTACATTACAGGGCCACATTTGTGCCATGAAGGTACATAATAATATCAAAAAAAGTACAATTGTGTAGGTCCTTCAAgatacaaaagtgtaccctaaatTATAGTACTTTAAGAGTaccaatgtaaacattttaagtacaaaattggtaccatcccagtgacaggttttgtacctttAATTCTGAGAGTGCAGTGTATACTATATAGGGGCTTTTTTGGACTATAGTTATAGGAACTATTCACCAATCCAAAACATTTTTCCCACTTGGTTGCATTCACTCTCCCAGTAGGAATTTTGGATGTTTTGGATGTCATTCAAGAACATTGACTTTGGTGTCAGCCAAGTTATGACTTGATCTATCTTGATTCAGGCAATATTTTCGGAAGTAAGTGCAGTGTATCTAAAATGTTTCTCTCGTTCTAAAACTATGCTATGAAATAGTAGCCAACTTAGTTTAATTAAAAGGAGTTTCTATTCCCAGTAGCTTTGTTCTGCACAGACCAAAAAGGGGATGCACTGCCAATAGTTCTAAGAACTATAAAACATCCTCTAATGCAAATGCCCCATAGAAGCACCATTTGGGGTCCTTCAAATCAGTTTGGACCAGTGTAGACTGTAAGGGAATTTTGCACAAGGATGTTCACCAGGATGGcctgcctaaaaaaaaaaaaaaaaaaaaaaaaaccattttttttttccccttggtTGCGTTCAATCTGCAAGTAGGTCTTTAGAGAACCGATGACAAGAACCTAGAGCTTGGTCGAGCCAATTTATGACTGTCTTGTTTGTGGCAATATTTTTTggaagtacagtacagtatatgtgAAATGGTAAACTATTTCTGTTTTTCTAAAATGAGACTATGCTAGTGGGCAATTTAGTTTTCTCAAATGAAGTTGCCTGTACCTGTGGTATGTACACACCAAACAGTTCCTATAACAAAGAAGCACCATTTGGGGTCTCTCCAATCAGCTGGGACCATTTTAGACTCTAGGGACAATAGTTTTTGGagacatttgtattattattatattattattataattattacatgTGGATTTGTATGACATGTTTGCCTAACACAAAACTTTTGGCACGGTAGTTCCTATTGTGCTGAGTTGGACCCTGCTCTAAAACAATAACTACtttagttttcctaaaagcagtttaaatatttaaacttgtTCCCAGTTCCTGTGATACAAAAATTGCCGCCTAATAGTTAAAGGAACTATGAATAAATTTCTCCAGGGCAAATACCCATTCACCATTCACACTCTGGTCTTTTCAACAGGTACTTTAAGCAGGGCTTTAAAAAGGGCTAACAGTAGAAAACTTGAAATTCATTGAACATTTTTGTGGTCatgcttaaaaacacaaactgtggtATCAATGTTTTTGGAGTATCACACTGCACAACACAGTTTAAGATGGGGTAATAGGTCAATTAGTTCAATAGATGTTTTTGAACTTTATTAACCAATCAACCAAGTTCTCACCAGCAAAACTGGACTATTACCAGGTCAATGAAGGCcatgatattaaaatatttaagcaaAATTGAGGAACAACTCAGTGTtgataatttcaaaataaaatcagaGCAAGATAAAGTATGTTTTCGAGTTTTGGAAGTTTCACTCCATGGATAAAAACCTTCATCAGTACCAGGCAGTTTTACATCAGGTATTTTCCCCCCAAAAGTAAATAACTAAAACAGAACTTTGCTCCAAGTACATcaaggcctacaatagctctatATCATCACATCAAATACCTAAGCGAGCTTAGGCCACAGGAAACCATGCAAACTCTGAATTTTTGTTAAGGGTTGGTTAAAGGGACATCTCTTGTATTATCTCCATGCTTCCCAAAAATCAAAAAATTCATACAGGTATGGAGTGacatgagcatgagcaaatgaaTGTTTAATGTTTGTTATCCCCTTAGCCTTGGATCTGATGCACCAAAAGCAGATATGACAAAACCATTACCCTGCATAACAATGATCAGGTGCAATCAAATATTTTGGTCTTTCTCTGTTCAGTGTTTTTCCTCTTCATCTGGTATTCCTCATTTGGAAAGTTTGCTTATGACTCTAATTAAGGCTCCGTTCTCATCTTTCAGCCGCTGGTTATCAGACTTCAGTTCGGTCAATACCTGAGAGAGGAACAGCAGAGGGACaaggaagaggaggaagagacAGAGAGATGGAGGAAGAATTACAGATCCTCTGACTCAGGCAGACAGGCCGTCTGAGAGAGGCGGGCCAGGGTGCGCAGCATGGCTTTATTTTCCACTAGGAGGCGTGCGTTCCCCCTGCGGAGAGCCTGCAGCCGAGCCAGAGCTGGAGGAGTCTGGAGATA

Function

GO:

id name namespace
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044776 True 5353 lncRNA 0.39 2 6328346 6341688

Neighbor

gene id symbol gene type direction distance location
XLOC_021459 syt2a coding upstream 14538 6232895 ~ 6313808 (+)
XLOC_021458 zmp:0000001139 coding upstream 172167 6141541 ~ 6156179 (+)
XLOC_021457 mybpha coding upstream 202343 6077503 ~ 6126003 (+)
XLOC_021456 NAV1 coding upstream 261310 5977965 ~ 6067036 (+)
XLOC_021455 CABZ01026153.1 coding upstream 405882 5871506 ~ 5922464 (+)
XLOC_021461 spo11 coding downstream 202765 6544453 ~ 6574123 (+)
XLOC_021462 rbm38 coding downstream 244779 6586467 ~ 6632106 (+)
XLOC_021463 NA coding downstream 293397 6635085 ~ 6661864 (+)
XLOC_021464 P4HTM coding downstream 411140 6752828 ~ 6789033 (+)
XLOC_021465 si:ch211-117c9.5 coding downstream 453843 6795531 ~ 6841245 (+)
XLOC_021452 NA non-coding upstream 704677 5595648 ~ 5623669 (+)
XLOC_021448 NA non-coding upstream 1186431 5129982 ~ 5141915 (+)
XLOC_021441 LO017700.2 non-coding upstream 1650846 4559564 ~ 4677500 (+)
XLOC_021432 NA non-coding upstream 2047239 4273916 ~ 4281107 (+)
XLOC_021466 BX005466.1 non-coding downstream 484000 6825688 ~ 6825802 (+)
XLOC_021467 NA non-coding downstream 510243 6851931 ~ 6865956 (+)
XLOC_021469 NA non-coding downstream 862851 7204539 ~ 7206195 (+)
XLOC_021470 si:dkeyp-73a2.2 non-coding downstream 1008482 7350170 ~ 7355780 (+)

Expression


Co-expression Network