G207876 (LOC106561706)


Basic Information

Item Value
gene id G207876
gene name LOC106561706
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95680851 ~ 95686864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU235348
GTAGCCCCCTTTTTCAAGGAAATATTTATTCAATGGGATCAAGGGACAGTGTCGATCACATCTTTTCCAGCTCAGTTAAATATTAACAAATTTACAATCATGAGGAATGTAACaaaaacagaaacaaaaacaCACCAGCCTTTCAAAAAGAATCTCATCCCTTCAGGACCCTCCACAGAGTGAGTAAAGTGTGGCCGATGGCCTCgacttagcctggtcccagatccgtTGGGCAAGAGCACACAAACGGATGTGGGACCGGGCTAGTCTTGATTGGTGGCTGTTGGGTATCCTAGCCAGCAGGTGGTCTTGGCTAGACAGACCGAATCACACCGACATTTCACCATTGTTTTCACTTAACACAGATAATGGAGTAGAAACAAACATGAACAGAAGTGTCATTCTGTCTGGGTTTCCAGGTAGGACTTGGGCCTTTGTTGTGGCTCAGCTCCAGGATAGGTCCATCATGACACCCTTCCTCATTTACAGTGCTTTATAACTCATCTTTGTCAGTTGCCTcttcttccacctctACCTCATCCTCAGTTGCATCTTTCTCCTCTGCCTCGGTGTCCTCATCAATGGGCTCCTCAACAGTCTCAGTCTGGGCAGGTGGAGGAGAAGGGGAAAAATGGCTAAATGTTATTCCTACAGCTCACTGCTACAATGGTTCACCATAGTTTGTTCCTTTGACAAACTGGTCTCAAACCCTTCCTCTCCTTTATCTATAATAAGCTCGATTCCACCATATTGTTTCAACCTGTAAATTATTTAGCCATCAGTGCAGATGGAGGGGGACAGGGAAAATAGTATAGTTCCACTCCCAATACCTTGCTGGACCAGACATAGATGGGGAAGTTGATGAACTGAGAGTACTTCCTGACCAGGTTCTTGATGGTCTCCAGCTCCAGGTAGTCTGTAGCCTCCTCCTTCATCACCAACCTGGACCAATCAGAAAGACAACCGGATAGAACCTCGTCAGTGTCAAAACACGAGTCAGTCAAAATAGATTTGACTCGGGGTCATGGTAGTTCGTGTTTTGAATTTCATTGAGGGATTTTGTCCTGTATTATCTTATAACGCTACACAAATTCATTTAATTCATGGCCACTGTATGAATAACCATAGCCTGGTATTCAAAAACTTTTAAATACGAGGAGCATTTGCTTGTGGCTGTCTAGGAATGGCAGTTTTCACTTTTGGAAGTACAAAAAAAATGaagtacttactatgactgatgTGTGGTTGTATCACCTagctgtaagtcactctggataaccATCTGTTCAATGAATAAAATGTAACCATAACAAATGCACTCTGAGACTCACGTGATGGTGGTGCCCCTTCCTAGGGTGTCTCCACGGGGGTCCTCGATCACACTGAACTCATTGGAGTCGGACTCCCAGATGTGCTGCGTGCCGTTGTTGTGCTTCGAAGACACAATCACCTTGTCAGCAACCAGGAAGGCGGAGTAGAAGCCCACTCCGAACTGTCCAATCAGCTCCGAGGTGGACTGGCCCTCACTTTCAACCTCTGTCATCTTGTTCAGGAACTCGCTGGTGCCCGACTTGGCGATAGTACCCAGGTTTCTAATCAGGTCTTCTTTTGTCATGCCGACACCCGTGTCTGTGATGTGGAGCATGTTCTTCTCCTTGTCAGACTAGGGAGACCACGAAGAGAACAGGTGAGCTCAACCTCAGACGTCCTAATGGTATTTTATTAATCAAATCCTTGTCTTACTAAGCAGAATGATCAGTCAAA
>TU235350
GTAGCCCCCTTTTTCAAGGAAATATTTATTCAATGGGATCAAGGGACAGTGTCGATCACATCTTTTCCAGCTCAGTTAAATATTAACAAATTTACAATCATGAGGAATGTAACaaaaacagaaacaaaaacaCACCAGCCTTTCAAAAAGAATCTCATCCCTTCAGGACCCTCCACAGAGTGAGTAAAGTGTGGCCGATGGCCTCgacttagcctggtcccagatccgtTGGGCAAGAGCACACAAACGGATGTGGGACCGGGCTAGTCTTGATTGGTGGCTGTTGGGTATCCTAGCCAGCAGGTGGTCTTGGCTAGACAGACCGAATCACACCGACATTTCACCATTGTTTTCACTTAACACAGATAATGGAGTAGAAACAAACATGAACAGAAGTGTCATTCTGTCTGGGTTTCCAGGTAGGACTTGGGCCTTTGTTGTGGCTCAGCTCCAGGATAGGTCCATCATGACACCCTTCCTCATTTACAGTGCTTTATAACTCATCTTTGTCAGTTGCCGCTTCTTCATCTGgaatttcctcctcttcctcagtcGCTTCATCCTCTGCTGGCTCTTCAGGCTCCTCCTCCGGCTCCTCCTCTGGCTCTTCCTCAACCTGTTCGGTGAGGTCCACATTCATACTGAGCCGCAGCATGCGCTCAATCCGGTCCCCGTAGGCCTTGGTGTCTTGGAGCTGGTAGCCCGAGCGCAGCGTGGCTGTCTCAAACAGCACCATGGCCAGGTCTGAGGCAGTCTGGTCCTCGCCATCCGTAGAAACACGTTTCAACATCTCCTTGATGAGAGGGTGCTTCGGGTTGATTTCCAATGTCTTCTTCTGGCTAGCATAATAATTTGTGGAGATGTCTTTCCCGGTCTGGTAGGCCTGAGCCTTCATAATCCTCTCCATGTTACCAGACCAGCCGTACTGGCTGGCTACAAGAGCACAGGGGGACTTGGTCAGCCTCTGGGACAGGATGGCCTTCTCAATctTGTCCTTTAGGGCGCTGTCCTTCATCCAGGTGGTGAGAGGTTCATACTCCTTCTCCAGGGCCTCCCTTGTCTCCTTGGCCTTGTCACTCTCGTCAAACTTGATGCCCTCTTTGGCCACGTTCTGGAAGCGCTTGCCATCGAACTCTGGCAGAGCCTGGACACAGTACTCATCTACTGGCTCGGTCAGGTAGATGACCTCATAACCCTTCTTCAACAGACTCTCTACGAAGGGAGAAGACTCCGCCTCCTTGCGGCTGGTCCCGGCCATGAAGTAGATCTTGTCCTGCTTGTCCTTCATCCTCTCCACGTACTGCTCCAGGCTGGCCAGCACCGTGTCGCTGTTGGAGGTCTGGAAACGCAGCAGCTTAGCCAGACGGGTCCTGTTGGAGTGGTCCTCGATCACACCCAGCTTGATGTTGGTGCCAAACTCCTTCCAGAACTTGTCGTTGTACTGCTCTTCGGCGATCTTCTTGATCATGTCCAGGGTCTTACGCACCAGCTTCTTACGGATCACTTGAGCAGCTTGTGTTGCTGCAGGGTTTCTCTAGACACGTTCAGGGGCAGGTCATCAGAGTCCACCACTCCCCTGACAAAGTTCAGGTATTTGGGCATCATGTCATTGAAGTCATCGGTGATGAAGACTCTACGGACAAACAGCTTGATGAAGTCGTTCTTCTTGGTTCCGTACTCGTCGAACATGCCCCTGGGGGCGGCAGCGGGGACAAACAGGATGGACTTGAAGGTGACCTCACCCTCGGCTGTGAAGTGGATGTGGGACAGGGGCTCGTCTGTCCTTGGAGAAGGTCTTGTAGAAAGCCTTGTACTCGTCTTCCTCTACTTCTTTGGCTGGTCTCGTCCAGATCGGCTTAATGTCGTTCATCAGCTCCCAGTCCCACACAGTCTTCTCAACCTTCTTTGGCTTgtcctccttctcatcctcctcttcttccacctctACCTCATCCTCAGTTGCATCTTTCTCCTCTGCCTCGGTGTCCTCA
>TU235346
GTAGCCCCCTTTTTCAAGGAAATATTTATTCAATGGGATCAAGGGACAGTGTCGATCACATCTTTTCCAGCTCAGTTAAATATTAACAAATTTACAATCATGAGGAATGTAACaaaaacagaaacaaaaacaCACCAGCCTTTCAAAAAGAATCTCATCCCTTCAGGACCCTCCACAGAGTGAGTAAAGTGTGGCCGATGGCCTCgacttagcctggtcccagatccgtTGGGCAAGAGCACACAAACGGATGTGGGACCGGGCTAGTCTTGATTGGTGGCTGTTGGGTATCCTAGCCAGCAGGTGGTCTTGGCTAGACAGACCGAATCACACCGACATTTCACCATTGTTTTCACTTAACACAGATAATGGAGTAGAAACAAACATGAACAGAAGTGTCATTCTGTCTGGGTTTCCAGGTAGGACTTGGGCCTTTGTTGTGGCTCAGCTCCAGGATAGGTCCATCATGACACCCTTCCTCATTTACAGTGCTTTATAACTCATCTTTGTCAGTTGCCTgttggccagagagagagagagaggttggttgTAGTTTCACCGTCATTAACTAAATCCATGCAAAAACAAGGCATCGATTGAAACTATGAATATTCAAATTAGAACCTCTTCCCCAGCCTATTGGGCACAGCAGATGAGGCTGCAgggaggagctacaggaggatgggctcattgtaatggcagagtcaaacatgtggtttccatacgtTTGATACCGTTCCGGCTATGACAATGAGCTTGCTCTCCAATAGCTCCTCCTATCAGCCACCTCTGGTGCACAGCGCATATAAGCCTGGTATATCAATCATTCAAAGTTGGCCTTAGTGGGAGTGATCAAGGTCTCGGCTAACCAAAGCCAAGTTTGACATGTTGGTCCACCAAACATTTGGGTGTTTGTGTCTGGGAATGAAGCTATCGGAACTATAAAAACCATGAATGACCATAATTTACCAACACTGGTCAACCAAAACATGCGATCTGTGAGACTCACCGCTTCTTCATCTGgaatttcctcctcttcctcagtcGCTTCATCCTCTGCTGGCTCTTCAGGCTCCTCCTCCGGCTCCTCCTCTGGCTCTTCCTCAACCTGTTCGGTGAGGTCCACATTCATACTGAGCCGCAGCATGCGCTCAATCCGGTCCCCGTAGGCCTTGGTGTCTTGGAGCTGGTAGCCCGAGCGCAGCGTGGCTGTCTCAAACAGCACCATGGCCAGGTCTGAGGCAGTCTGGTCCTCGCCATCCGTAGAAACACGTTTCAACATCTCCTTGATGAGAGGGTGCTTCGGGTTGATTTCCAATGTCTTCTTCTGGCTAGCATAATAATTTGTGGAGATGTCTTTCCCGGTCTGGTAGGCCTGAGCCTTCATAATCCTCTCCATGTTACCAGACCAGCCGTACTGGCTGGCTACAAGAGCACAGGGGGACTTGGTCAGCCTCTGGGACAGGATGGCCTTCTCAATctTGTCCTTTAGGGCGCTGTCCTTCATCCAGGTGGTGAGAGGTTCATACTCCTTCTCCAGGGCCTCCCTTGTCTCCTTGGCCTTGTCACTCTCGTCAAACTTGATGCCCTCTTTGGCCACGTTCTGGAAGCGCTTGCCATCGAACTCTGGCAGAGCCTGGACACAGTACTCATCTACTGGCTCGGTCAGGTAGATGACCTCATAACCCTTCTTCAACAGACTCTCTACGAAGGGAGAAGACTCCGCCTCCTTGCGGCTGGTCCCGGCCATGAAGTAGATCTTGTCCTGCTTGTCCTTCATCCTCTCCACGTACTGCTCCAGGCTGGCCAGCACCGTGTCGCTGTTGGAGGTCTGGAAACGCAGCAGCTTAGCCAGACGGGTCCTGTTGGAGTGGTCCTCGATCACACCCAGCTTGATGTTGGTGCCAAACTCCTTCCAGAACTTGTCGTTGTACTGCTCTTCGGCGATCTTCTTGATCATGTCCAGGGTCTTACGCACCAGCTTCTTACGGATCACCTTGAGCAGCTTGTGTTGCTGCAGGGTTTCTCTAGACACGTTCAGGGGCAGGTCATCAGAGTCCACCACTCCCCTGACAAAGTTCAGGTATTTGGGCATCATGTCATTGAAGTCATCGGTGATGAAGACTCTACGGACAAACAGCTTGATGAAGTCGTTCTTCTTGGTTCCGTACTCGTCGAACATGCCCCTGGGGGCGGCAGCGGGGACAAACAGGATGGACTTGAAGGTGACCTCACCCTCGGCTGTGAAGTGGATGTGGGACAGGGGCTCGTCTGTGTCCTGG

Function

NR:

description
GRP94a protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU235348 False 1764 lncRNA 0.36 2 95680851 95686864
TU235350 False 1991 TUCP 0.52 11 95682037 95686864
TU235346 True 2282 TUCP 0.51 8 95682623 95686864

Neighbor

gene id symbol gene type direction distance location
LOC110502485 LOC106561707 coding downstream 16348 95635896 ~ 95664503 (-)
parietopsin LOC106561711 coding downstream 48879 95628449 ~ 95632062 (-)
LOC118944198 NA coding downstream 409579 95271093 ~ 95271272 (-)
LOC110502417 LOC106561684 coding downstream 556304 95097379 ~ 95124547 (-)
LOC110500368 LOC105021811 coding downstream 660422 95015675 ~ 95020429 (-)
LOC110500466 nampt coding upstream 16495 95703359 ~ 95721115 (-)
LOC110533932 NA coding upstream 195267 95882131 ~ 95883679 (-)
LOC110502500 LOC106561698 coding upstream 364438 96051302 ~ 96092405 (-)
LOC110502509 LOC106561697 coding upstream 443447 96129727 ~ 96370206 (-)
LOC110500576 NA coding upstream 946977 96633841 ~ 96640404 (-)
G207880 NA non-coding downstream 45436 95634521 ~ 95635415 (-)
G207885 NA non-coding downstream 46499 95634077 ~ 95634352 (-)
G207878 NA non-coding downstream 47436 95632297 ~ 95633415 (-)
G208010 NA non-coding downstream 55845 95624090 ~ 95625006 (-)
G207883 NA non-coding upstream 11259 95698123 ~ 95702054 (-)
G208037 NA non-coding upstream 30618 95717482 ~ 95718864 (-)
G208045 NA non-coding upstream 43585 95730449 ~ 95730692 (-)
G208046 NA non-coding upstream 44511 95731375 ~ 95731596 (-)
G208060 NA non-coding upstream 76930 95763794 ~ 95764050 (-)
G207884 NA other downstream 71065 95604228 ~ 95609786 (-)
G207959 NA other downstream 156624 95523968 ~ 95524227 (-)
G207858 LOC106561692 other downstream 272137 95377723 ~ 95408714 (-)
G207340 LOC105021815 other downstream 904495 94762662 ~ 94776356 (-)
G207249 NA other downstream 1051112 94629437 ~ 94629739 (-)
G208077 NA other upstream 142510 95829374 ~ 95832362 (-)
G208472 NA other upstream 447213 96134077 ~ 96134472 (-)
G208658 NA other upstream 735002 96421866 ~ 96422224 (-)
G209560 NA other upstream 1729957 97416821 ~ 97417188 (-)
G209802 NA other upstream 1814308 97501172 ~ 97502394 (-)

Expression


Co-expression Network