XLOC_021463


Basic Information

Item Value
gene id XLOC_021463
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 6635085 ~ 6661864 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042671
CAAAGATCCAGGAGTTGGGAGTAATTTTGAGCATGACGTTTCGTGGCCTTGATTAGGTACAGGTGATTTTCACCAACTGAGGGCGCTGCAAACTACACTCTTCAGTACTACTTCAGTTATTCAGTTCAGCTGCATGAAGACCTGAAGCTGCTCGACAACAACGCTTATCAGCAGAGACACCGCTAACAGTGCAAGGTGGCCCATAGTAACAGAGAATCCAATGGACAGAGCAGCAGAACCCAGACGTCCATTTCTTCTTTCATCAGTGACAGCGAAAACGCAGACCACCAACTGCATAGTGAGGAACACCTCCACTGTGGTGGCCATTCCCAGACTCATGCCAGGCTGAAGCTGGAGAGAAACATCAACAGgacatgggcTGAAATTAGAAAGGTATCTCCTTTCAGAAAGAGGCTAATTAATTCCAGTGGAGGAGACGGCAGGAGGCCCGGGCACAAAGGGATCTCTCCTCCCCTTCTCCAGCTCAATCAAACCTCCAGCACCATCAGCCATGAGATTTCAGCACAGCATGATGATCAACATCAGCTTCAGTTcggtacaacaacaacaacaagtctCCGCTACATGCTAACAGGTTGCTCATTTCAGCTGCTCCTCACAGTCACTTTGAGGATCTAAGTGTTGGCCGGTATGGTTTTTAGGATATAATTAAAGCTTTATTATGTGCCACTGTTGGGTTTGGGTGCCGACATGCTTTAATTATAAAGCACCGAAAACACAAGTGCGCACATATATTATCCAGCGTGTTCCTCCTTTCATCATCCTCCTTCTGAAGTGCTGTGGTCATCGCCATGGCTACAGCCTGATTCAGTTGCCATGACGGCTATTATGATGTCGCAGGCACTCTTTAAAGTGGCCTGTTTCAGATGAGCTAAACACACAGTCAGGACCTTCTGCTGGCCTTTAGTTCCTTTGCTCCAATGCATGGTAAGTTTAGCACAATTCAGTATCAGCTTTACTCAAATGTGCTTCATTTTTAGACAAATATgataaacatacttttttttcagaaatacgACTAATCCACATCTTCAAAGAATGCAAAAGAGTTTTGCATTTAATCAGGTTccctaataaaaagaaaaatatatactgtatatatacactacctgaccaaagtcttgtcaCCCATCAAAATTTTAAGtacaa
>TCONS_00042670
GCAAACTACACTCTTCAGTACTACTTCAGTTATTCAGTTCAGCTGCATGAAGACCTGAAGCTGCTCGACAACAACGCTTATCAGCAGAGACACCGCTAACAGTGCAAGGTGGCCCATAGTAACAGAGAATCCAATGGACAGAGCAGCAGAACCCAGACGTCCATTTCTTCTTTCATCAGTGACAGCGAAAACGCAGACCACCAACTGCATAGTGAGGAACACCTCCACTGTGGTGGCCATTCCCAGACTCATGCCAGGCTGAAGCTGGAGAGAAACATCAACAGAAAACACAGTGAAACCCAGAAGAAACGTAGCAAGCATCTCCATTCCAAGAGCTTGACCTGCGTTCATCTCCACTGGGACCTTCAGTGAGGAAAATAAGAggataaaatgtgta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097678

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042671 False 1170 lncRNA 0.44 3 6635085 6661864
TCONS_00042670 True 397 lncRNA 0.48 3 6635172 6652147

Neighbor

gene id symbol gene type direction distance location
XLOC_021462 rbm38 coding upstream 2979 6586467 ~ 6632106 (+)
XLOC_021461 spo11 coding upstream 60962 6544453 ~ 6574123 (+)
XLOC_021460 NA coding upstream 293397 6328346 ~ 6341688 (+)
XLOC_021459 syt2a coding upstream 321277 6232895 ~ 6313808 (+)
XLOC_021458 zmp:0000001139 coding upstream 478906 6141541 ~ 6156179 (+)
XLOC_021464 P4HTM coding downstream 90964 6752828 ~ 6789033 (+)
XLOC_021465 si:ch211-117c9.5 coding downstream 133667 6795531 ~ 6841245 (+)
XLOC_021466 BX005466.1 coding downstream 163824 6825688 ~ 6825802 (+)
XLOC_021467 NA coding downstream 190067 6851931 ~ 6865956 (+)
XLOC_021468 si:ch211-117c9.1 coding downstream 264319 6926183 ~ 6943491 (+)
XLOC_021455 CABZ01026153.1 non-coding upstream 712621 5871506 ~ 5922464 (+)
XLOC_021452 NA non-coding upstream 1011416 5595648 ~ 5623669 (+)
XLOC_021448 NA non-coding upstream 1493170 5129982 ~ 5141915 (+)
XLOC_021441 LO017700.2 non-coding upstream 1957585 4559564 ~ 4677500 (+)
XLOC_021469 NA non-coding downstream 542675 7204539 ~ 7206195 (+)
XLOC_021470 si:dkeyp-73a2.2 non-coding downstream 688306 7350170 ~ 7355780 (+)
XLOC_021472 NA non-coding downstream 740943 7402807 ~ 7435316 (+)

Expression


Co-expression Network