XLOC_021469


Basic Information

Item Value
gene id XLOC_021469
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 7204539 ~ 7206195 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044656
gagagagagagagagagagagagagagattatatttgtgtgtgtgcgtgtgttaggttgagtcttattctactcttattatattcatatttttttgcagtcacagccactgatgttgaaacactgatgctaccaatcaacccttgcttgattattaaaggtaatgttgatgccttcctcatttttattagatttttaaatgtcaggtttttcacagatttgttgtgagcagtttcttgtacaaactctttttcttcttccagaagttccaccagtacctccagtcgtagtaaatattagacaaagattttttaaactatagtttttatttttattagcaattttactgggcatgtgtgtttgtttgcttggtttttaataggcagagcatggaatgtcaactttgtttctacaaactaatttaattattcacaaacacctctaatttagtccttctttcccccttttagtcttattccttggagggtcgagtggtcttgggacctcacctggatttcacaactgactttggatctggtctgaaactgaagtatgctgaagatgccttttgcactctggaatttaagggccgtgttgcagacacaatttttttgtctgtgctggagaccaaaggggaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcaggtgctttttcggcaccagtttggagatgggaGACAGACGAAGTCcaagaagcagagaagacacatctaccagcaagtgtgtaaaattatcaggaaaatgattgaccttgaatagacgactgcctaatttagcaagaagttttgtctctctctctctcatgtgtgtatgtgtatatatatataatgagagagagagagagcactctgaagcactgctttttatatgtatgctacatatgatgtcagattttttttattaatatgttcttagagtattttttgaggcttca
>TCONS_00044655
gagagagagagagagagagagagagagattatatttgtgtgtgtgcgtgtgttaggttgagtcttattctactcttattatattcatatttttttgcagtcacagccactgatgttgaaacactgatgctaccaatcaacccttgcttgattattaaagtcttattccttggagggtcgagtggtcttgggacctcacctggatttcacaactgactttggatctggtctgaaactgaagtatgctgaagatgccttttgcactctggaatttaagggccgtgttgcagacacaatttttttgtctgtgctggagaccaaaggggaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcaggtgctttttcggcaccagtttggagatgggaGACAGACGAAGTCcaagaagcagagaagacacatctaccagcaagtgtgtaaaattatcaggaaaatgattgaccttgaatagacgactgcctaatttagcaagaagttttgtctctctctctctcatgtgtgtatgtgtatatatatataatgagagagagagagagcactctgaagcactgctttttatatgtatgctacatatgatgtcagattttttttattaatatgttcttagagtattttttgaggcttca

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044656 False 979 lncRNA 0.37 3 7204539 7206195
TCONS_00044655 True 669 lncRNA 0.39 4 7204539 7206195

Neighbor

gene id symbol gene type direction distance location
XLOC_021468 si:ch211-117c9.1 coding upstream 261048 6926183 ~ 6943491 (+)
XLOC_021467 NA coding upstream 338583 6851931 ~ 6865956 (+)
XLOC_021465 si:ch211-117c9.5 coding upstream 363294 6795531 ~ 6841245 (+)
XLOC_021466 BX005466.1 coding upstream 378737 6825688 ~ 6825802 (+)
XLOC_021464 P4HTM coding upstream 415506 6752828 ~ 6789033 (+)
XLOC_021470 si:dkeyp-73a2.2 coding downstream 143975 7350170 ~ 7355780 (+)
XLOC_021471 gata5 coding downstream 173533 7379728 ~ 7391028 (+)
XLOC_021472 NA coding downstream 196612 7402807 ~ 7435316 (+)
XLOC_021473 rbbp8l coding downstream 264877 7471072 ~ 7504017 (+)
XLOC_021474 hck coding downstream 299748 7505943 ~ 7545960 (+)
XLOC_021463 NA non-coding upstream 542675 6635085 ~ 6661864 (+)
XLOC_021460 NA non-coding upstream 862851 6328346 ~ 6341688 (+)
XLOC_021455 CABZ01026153.1 non-coding upstream 1282075 5871506 ~ 5922464 (+)
XLOC_021479 NA non-coding downstream 1581800 8787995 ~ 8811654 (+)
XLOC_021488 CU137717.1 non-coding downstream 2101379 9307574 ~ 9308561 (+)
XLOC_021490 NA non-coding downstream 2190473 9396668 ~ 9403617 (+)

Expression


Co-expression Network