XLOC_021471 (gata5)



Basic Information


Item Value
gene id XLOC_021471
gene name gata5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 7379728 ~ 7391028 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00042678
GGAGTGCGTCACGTGGTTCTGCTCTAACAAATAACTCGCAGTAAAGTAGAGAGCAAATCAGGGAACAGTTATATTAGGCATTatctgcagcagcagcagttaTCTCCAGATACAGACAAGCCTCGGTGACAAGCCCAAACGCGGAGAGGACAACTACAAGTTTTTCGACTGTCGCTTATTTTCGCTGAAGTTTGAATTCTGGGCTAAAATCAAGAAGAAAGAAGAGACTGGGAACCTCGACGGCGATATTCAATCAAGTCACTTGGAAGAGAGGGTTCCCGACTTTATCACCAACCATCCTTATCTGGAAAGAATTTCATTTTCTGTGGCCTCTGATCAGGAAACCATCGCATTTGGAGATTTTGGACGTTAACAAGGTTTTTAACTAGCCTACAATCTGGGCGAATTTTGAGATTTCGAAATCTAGCTTATTCACTGGATATATCATGTATTCGAGCCTGGCTTTATCTTCCAACCCGTCCCCCTACGCACACGATTCCGGGAACTACATCCATCCGTCTGCCAGCTCACCTGTGTATGTACCCACCACTCGTGTACCAGCCATGCTCCAGACCTTGCCCTACCTACAGACTTGCGAGTCCAGCCACCAAGCCCATGGGATCAGCAGTCACCACGCCTGGCCACAGACTGGCACCGATAACTCTTCGTTCAACCCCGGTAGCCCTCATCCACCGCCCGGTTTCTCTTATTCGCACAGTCCGCCAGTGAGCAGCAGCACCGGCAGGGACGCCGCGTACCAGAACCCGTTAATGTTAAGTAACGGCGGCCGTGCGGATCAATATGGAAGTGCCCTGGTGCGCTCCGTCGGTGGCTCTTATTCCAGCCCGTACGCGGCCTACATGAGCCCGGAGATGGCAACCTCATGGACGCCTGGGCCCTTTGATGGCGGCATGATCGGTCTTCAGGGACGCCAGGGAACTCTACCGGGAAGGAGGTCCAGTATAGACATGCTGGATGACCTGCCGTGTGAAGGGCGCGAGTGTGTGAACTGCGGCTCAATCTCAACGCCGCTGTGGAGAAGAGACGGAACCGGACACTACCTGTGCAACGCGTGCGGCCTTTACCACAAGATGAACGGCATCAATCGACCTCTTATCAAACCACAGAAACGCCTGCAAAGCACATCACGACGAGCAGGTCTGTGTTGCACTAACTGTCATACTAGTACGACAACACTGTGGAGGAGAAACGCAGAGGGAGAGCCAGTCTGCAATGCATGTGGACTTTACATGAAGCTTCATGGGGTACCAAGGCCATTAGCTATGAAAAAAGAAAGCATTCAGACAAGGAAACGCAAACCAAAGATGCCCAAAACCAAATCATCCTCAGGGTCAACAGTGTCTGGCGCTACGTCTCCCACTTCACTGCCTGTGTCAGAAAACGCCTCTACAATAAAAAGTGAACCTAGTATCGCAGCTTCTCCATATGCAGGCCAAACCGTTGTCTCGGTCACACAGGCATCGACACAGTTGGATAGTGCCAGTTCTGCCCATGTGGACATCAAATATGAAGACTACACATACACCCCGACGTCGATCGCCCCACAGAACTCCTGGTGTGCTCTGTCTCAAGCGTGATCCGAGACCTCCACTGAAACCTCTCTGGCATGGGAGAAAAGACTTTTAACTGAATCTACCTAATAGGACTTTTACACAAATGTAGACAGACGGTGCTTAGGAAAGCAAGACATTGACAGTAATTTGTGCTACTTTTCCTCCTTGATTTATGGTGGCATATCTATGATGTCACGGCCAATTCATGCAATTCCACCAAAAATATGGTGGATGACAAGCAGCGCCTCTGTAACAGTTCTTGAGTTCCAATGATCGGGAGGACAAAAAACATGCTTTTTATGGCTACTGAACGTTTCATGGCTTAGTTGTTAATGATTACCTTTTAAGATACATTATTTATGTTGAGATAAGAATGGTGGAGGCACACAAGTCTCTCTCCCATAATTCCCTTTATCCTTCAGGGAATGCGTCTTTATGGTCGTTATGACTTGAGATCGCATACTTTCCCTGGATGAGGCCTTTTAAAAGTTTCCTTGTTGTCTTTGCTGATTCCAGACTCTGTCAATGTTGTATTGTATTCCTCCGATGATCTGAAGTGCAATGACCCGCGCCGCTTTTCAGCCGATTTTGAAAAGGGACACGTTTATATTAATTGTTTCGAaattctgtgttttgttttttgtcagaaTATGTTAACCTaaatttatttgatgtattttgttGATATATATTGGAATTATATCGTTTCATGGCATATAAAATTGACCGACATCTA

Function


symbol description
gata5 Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of with a negative effect on gene expression. Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ development; and post-embryonic foregut morphogenesis. Located in nucleus. Is expressed in several structures, including DEL; cardiovascular system; digestive system; mesoderm; and presumptive structure. Orthologous to human GATA5 (GATA binding protein 5).

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0001706 endoderm formation biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0007492 endoderm development biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0031016 pancreas development biological_process
GO:0048538 thymus development biological_process
GO:0045165 cell fate commitment biological_process
GO:0060972 left/right pattern formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048618 post-embryonic foregut morphogenesis biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0001889 liver development biological_process
GO:0003007 heart morphogenesis biological_process
GO:0030878 thyroid gland development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-980526-340 Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of with a negative effect on gene expression. Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ development; and post-embryonic foregut morphogenesis. Located in nucleus. Is expressed in several structures, including DEL; cardiovascular system; digestive system; mesoderm; and presumptive structure. Orthologous to human GATA5 (GATA binding protein 5).

Ensembl:

ensembl_id ENSDARG00000017821

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00042678 True 2310 mRNA 0.47 7 7379728 7391028

Neighbor


gene id symbol gene type direction distance location
XLOC_021470 si:dkeyp-73a2.2 coding upstream 23948 7350170 ~ 7355780 (+)
XLOC_021469 NA coding upstream 173533 7204539 ~ 7206195 (+)
XLOC_021468 si:ch211-117c9.1 coding upstream 436237 6926183 ~ 6943491 (+)
XLOC_021467 NA coding upstream 513772 6851931 ~ 6865956 (+)
XLOC_021465 si:ch211-117c9.5 coding upstream 538483 6795531 ~ 6841245 (+)
XLOC_021472 NA coding downstream 11779 7402807 ~ 7435316 (+)
XLOC_021473 rbbp8l coding downstream 80044 7471072 ~ 7504017 (+)
XLOC_021474 hck coding downstream 114915 7505943 ~ 7545960 (+)
XLOC_021475 tm9sf4 coding downstream 157769 7548797 ~ 7578892 (+)
XLOC_021476 pofut1 coding downstream 301014 7692042 ~ 7709134 (+)
XLOC_021466 BX005466.1 non-coding upstream 553926 6825688 ~ 6825802 (+)
XLOC_021463 NA non-coding upstream 717864 6635085 ~ 6661864 (+)
XLOC_021479 NA non-coding downstream 1396967 8787995 ~ 8811654 (+)
XLOC_021488 CU137717.1 non-coding downstream 1916546 9307574 ~ 9308561 (+)
XLOC_021490 NA non-coding downstream 2005640 9396668 ~ 9403617 (+)
XLOC_021493 CR388392.1 non-coding downstream 2227185 9618213 ~ 9618335 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_04989798_04995415 GATA5 coding CI01000021 null 4989720 ~ 4996464 (-)