Item | Value |
---|---|
gene id | XLOC_021471 |
gene name | gata5 |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007134.7 |
NCBI id | CM002907.2 |
chromosome length | 46223584 |
location | 7379728 ~ 7391028 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
gata5 | Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of with a negative effect on gene expression. Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ development; and post-embryonic foregut morphogenesis. Located in nucleus. Is expressed in several structures, including DEL; cardiovascular system; digestive system; mesoderm; and presumptive structure. Orthologous to human GATA5 (GATA binding protein 5). |
id | name | namespace |
---|---|---|
GO:0030099 | myeloid cell differentiation | biological_process |
GO:0001706 | endoderm formation | biological_process |
GO:0048738 | cardiac muscle tissue development | biological_process |
GO:0007492 | endoderm development | biological_process |
GO:0007507 | heart development | biological_process |
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0043011 | myeloid dendritic cell differentiation | biological_process |
GO:0003143 | embryonic heart tube morphogenesis | biological_process |
GO:0055007 | cardiac muscle cell differentiation | biological_process |
GO:0031016 | pancreas development | biological_process |
GO:0048538 | thymus development | biological_process |
GO:0045165 | cell fate commitment | biological_process |
GO:0060972 | left/right pattern formation | biological_process |
GO:0060975 | cardioblast migration to the midline involved in heart field formation | biological_process |
GO:0010467 | gene expression | biological_process |
GO:0010468 | regulation of gene expression | biological_process |
GO:0048618 | post-embryonic foregut morphogenesis | biological_process |
GO:0070121 | Kupffer's vesicle development | biological_process |
GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
GO:0001889 | liver development | biological_process |
GO:0003007 | heart morphogenesis | biological_process |
GO:0030878 | thyroid gland development | biological_process |
GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
GO:0003318 | cell migration to the midline involved in heart development | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0043565 | sequence-specific DNA binding | molecular_function |
GO:0005515 | protein binding | molecular_function |
GO:0046872 | metal ion binding | molecular_function |
GO:0003677 | DNA binding | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
id | description |
---|---|
ko03000 | Transcription factors |
id | description |
---|---|
ZDB-GENE-980526-340 | Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of with a negative effect on gene expression. Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ development; and post-embryonic foregut morphogenesis. Located in nucleus. Is expressed in several structures, including DEL; cardiovascular system; digestive system; mesoderm; and presumptive structure. Orthologous to human GATA5 (GATA binding protein 5). |
ensembl_id | ENSDARG00000017821 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00042678 | True | 2310 | mRNA | 0.47 | 7 | 7379728 | 7391028 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_021470 | si:dkeyp-73a2.2 | coding | upstream | 23948 | 7350170 ~ 7355780 (+) |
XLOC_021469 | NA | coding | upstream | 173533 | 7204539 ~ 7206195 (+) |
XLOC_021468 | si:ch211-117c9.1 | coding | upstream | 436237 | 6926183 ~ 6943491 (+) |
XLOC_021467 | NA | coding | upstream | 513772 | 6851931 ~ 6865956 (+) |
XLOC_021465 | si:ch211-117c9.5 | coding | upstream | 538483 | 6795531 ~ 6841245 (+) |
XLOC_021472 | NA | coding | downstream | 11779 | 7402807 ~ 7435316 (+) |
XLOC_021473 | rbbp8l | coding | downstream | 80044 | 7471072 ~ 7504017 (+) |
XLOC_021474 | hck | coding | downstream | 114915 | 7505943 ~ 7545960 (+) |
XLOC_021475 | tm9sf4 | coding | downstream | 157769 | 7548797 ~ 7578892 (+) |
XLOC_021476 | pofut1 | coding | downstream | 301014 | 7692042 ~ 7709134 (+) |
XLOC_021466 | BX005466.1 | non-coding | upstream | 553926 | 6825688 ~ 6825802 (+) |
XLOC_021463 | NA | non-coding | upstream | 717864 | 6635085 ~ 6661864 (+) |
XLOC_021479 | NA | non-coding | downstream | 1396967 | 8787995 ~ 8811654 (+) |
XLOC_021488 | CU137717.1 | non-coding | downstream | 1916546 | 9307574 ~ 9308561 (+) |
XLOC_021490 | NA | non-coding | downstream | 2005640 | 9396668 ~ 9403617 (+) |
XLOC_021493 | CR388392.1 | non-coding | downstream | 2227185 | 9618213 ~ 9618335 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000021_04989798_04995415 | GATA5 | coding | CI01000021 | null | 4989720 ~ 4996464 (-) |