G209478


Basic Information

Item Value
gene id G209478
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97261694 ~ 97265605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU237173
TATGAATATTATCCAAATGCATCAGAATCTGTCATGGCTTCACGTTAGAAACAAATTACTATCTAGtcttcagattttaaaaaaaaacagcatttTTCATGCCAATTAGTACATACTAGCAACACGCATAACCACCAAACCAAACTGGCAAATTAAGGGCAGCTAAAACAACCCAAGCCAGGGACAAATTGCCTTAAATCTACAGTTTTGTATAGAGccatagctgaatggaactctttacccaTCCATATTTCTCAGGCAAAAAGTAAATTCATcttcaagatttttttttttttttttacatctgatgtgatagaccatatgactggacaggaagtagaaagcatcaactgaatgttaaatgtgtttcctgtcaggtattttatattgtctgtattgtctaatcaaatcaaagtttatttgccacgtgcgccgaatacaacaggtgtagtagaccttagagtgacatgctgaatacaacaggtgtagtagaccttagagtgacatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtaggtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaagtgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttagagtgacatgctgaatacaacaggtgtagtagaccttacagtaaaatgctgaatacaacaggtgtagtagaccttagagtgacatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgacatgctgaatacaacaggtgtagtagacctcacagtgacatgctgaatacaacaggtgtaggtagacctacagtgacatgctgaatacaacaggtgtagtagaccttacagtgtaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttagtgaaatgctgaatacaacaggtgtagtagaccttagtgaaatgctgaatacaacaggtgtagtagacctacagtaaaatgccgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagaccttaggtgaacaatagataagtaaataagttaaacaacagtaaaaagacagtgaaaaataacagtagtgaggctatatacagtagagaggcaatatacagtagagagtttatatacagtagaggggctatagacagtagagaggctatatacagtagtgaggctatatacactagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagtgaggctatatacagtagagaggctacatatagtagagaggctatatacagtagagaggctatatacagtagtgaggctatttacagtagaggctatatacagtagagagactacatacagtagagaggctatatacagtagagaggctatatacagtagagaggctacatacagacaccggttagtcaggctgattgaggtagtatgtacatgcagatatggttaaagtaactatgcatatatgatgaacagagagt

Function

NR:

description
PREDICTED: collagen EMF1-alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237173 True 2049 lncRNA 0.42 5 97261694 97265605

Neighbor

gene id symbol gene type direction distance location
pik3c2g LOC106561742 coding downstream 183794 97019591 ~ 97077900 (-)
LOC110500541 LOC106561741 coding downstream 364621 96647130 ~ 96897073 (-)
LOC110500576 NA coding downstream 621290 96633841 ~ 96640404 (-)
LOC110502509 LOC106561697 coding downstream 891488 96129727 ~ 96370206 (-)
LOC110502500 LOC106561698 coding downstream 1169289 96051302 ~ 96092405 (-)
LOC118937309 NA coding upstream 228739 97494344 ~ 97496498 (-)
LOC118944190 NA coding upstream 356401 97621775 ~ 97675000 (-)
LOC118944213 NA coding upstream 360176 97625781 ~ 97625897 (-)
LOC118944196 NA coding upstream 382256 97647861 ~ 97648048 (-)
LOC118943865 LOC106593246 coding upstream 386601 97626323 ~ 97690421 (-)
G209474 NA non-coding downstream 13099 97245477 ~ 97248595 (-)
G209443 NA non-coding downstream 95215 97166106 ~ 97166479 (-)
G209422 NA non-coding downstream 152645 97108548 ~ 97109049 (-)
G209416 NA non-coding downstream 175178 97086040 ~ 97086516 (-)
G209373 NA non-coding downstream 303679 96956653 ~ 96958015 (-)
G209486 NA non-coding upstream 23246 97288851 ~ 97290520 (-)
LOC110502515 reln non-coding upstream 121940 97089207 ~ 97387953 (-)
G209535 NA non-coding upstream 122534 97388139 ~ 97388460 (-)
G209548 NA non-coding upstream 130158 97395763 ~ 97400002 (-)
G209559 NA non-coding upstream 149011 97414616 ~ 97414915 (-)
G208658 NA other downstream 839470 96421866 ~ 96422224 (-)
G208472 NA other downstream 1127222 96134077 ~ 96134472 (-)
G208077 NA other downstream 1429332 95829374 ~ 95832362 (-)
G207876 LOC106561706 other downstream 1574830 95680851 ~ 95686864 (-)
G207884 NA other downstream 1651908 95604228 ~ 95609786 (-)
G209560 NA other upstream 151216 97416821 ~ 97417188 (-)
G209802 NA other upstream 235567 97501172 ~ 97502394 (-)
G209841 NA other upstream 353254 97618859 ~ 97619212 (-)
LOC118936884 NA other upstream 878715 98127948 ~ 98145517 (-)
LOC118943885 LOC106561728 other upstream 1652843 98914015 ~ 98946069 (-)

Expression


Co-expression Network