G209220


Basic Information

Item Value
gene id G209220
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97387524 ~ 97388004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU236867
AGGAAGAAGAAAGGGTTGAAGTGGGGGTAGAAGCCTGCCACAGGGGGACTCCCCAAATCCATACCGGCCGCCAACACCAGGGCCAGCAGGGCACAGCCGAGGGCACCCCCGAAAGAGGCCCGTGCCATCCCCCCCGTGAAGAACGAGGgaaagagggaacgagggagagctgGAGGAGGCAGAGTGAGAGTGGTGGTGCGTGGTGGACAGGTTGTCACAGATAGAGCTCCAGATGGCTTGAGGGCTGGAGTCAACTTGGAGAAAGAAAGTCCAGCTGGATGGGTGAGGTTACGTTCTAGAAGTGTGtggatatatgtgtgtgtgtggtgctggcTATAAGCAGACTGTTAGCACTCTGTTTCTgtgttcctcttcttcttctcttctctttctctcctctcttccgtcTACTCT
>TU236870
AGGAAGAAGAAAGGGTTGAAGTGGGGGTAGAAGCCTGCCACAGGGGGACTCCCCAAATCCATACCGGCCGCCAACACCAGGGCCAGCAGGGCACAGCCGAGGGCACCCCCGAAAGAGGCCCGTGCCATCCCCCCCGTGAAGAACGAGGgaaagagggaacgagggagagctgGAGGAGGCAGAGTGAGAGTGGTGGTGCGTGGTGGACAGGTTGTCACAGATAGAGCTCCAGATGGCTTGAGGGCTGGAGTCAACTTGGAGAAAGAAAGTCCAGCTGGATGGGTGAGGTTACGTTCTAGAAGTGTGtggatatatgtgtgtgtgtggtgctggcTATAAGCAGACTGTTAGCACTCTGTTTCTgtgttcctcttcttcttctcttctctttctctcctctcttccgtcTACTCTGTGGGAGTTCAGAGctagtctgttctgtcctgctccaTGGTTTAAatacctcctcccccctccctct
>TU236868
GgaaagagggaacgagggagagctgGAGGAGGCAGAGTGAGAGTGGTGGTGCGTGGTGGACAGGTTGTCACAGATAGAGCTCCAGATGGCTTGAGGGCTGGAGTCAACTTGGAGAAAGAAAGTCCAGCTGGATGGGTGAGGTTACGTTCTAGAAGTGTGtggatatatgtgtgtgtgtggtgctggcTATAAGCAGACTGTTAGCACTCTGTTTCTgtgttcctcttcttcttctcttctctttctctcctctcttccgtcTACTCT
>TU236871
GgaaagagggaacgagggagagctgGAGGAGGCAGAGTGAGAGTGGTGGTGCGTGGTGGACAGGTTGTCACAGATAGAGCTCCAGATGGCTTGAGGGCTGGAGTCAACTTGGAGAAAGAAAGTCCAGCTGGATGGGTGAGGTTACGTTCTAGAAGTGTGtggatatatgtgtgtgtgtggtgctggcTATAAGCAGACTGTTAGCACTCTGTTTCTgtgttcctcttcttcttctcttctctttctctcctctcttccgtcTACTCTGTGGGAGTTCAGAGctagtctgttctgtcctgctccaTGGTTTAAatacctcctcccccctccctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236867 False 414 lncRNA 0.40 1 97387524 97387937
TU236870 False 481 lncRNA 0.36 1 97387524 97388004
TU236868 False 267 lncRNA 0.49 1 97387671 97387937
TU236871 True 334 lncRNA 0.57 1 97387671 97388004

Neighbor

gene id symbol gene type direction distance location
LOC110500594 LOC106561738 coding upstream 299769 97085929 ~ 97087755 (+)
LOC110500585 LOC106561739 coding upstream 302483 97081935 ~ 97085041 (+)
LOC110500557 LOC106561743 coding upstream 359336 96971391 ~ 97028188 (+)
LOC110500533 LOC106561700 coding upstream 1343954 96034220 ~ 96043570 (+)
LOC110500522 gpr22 coding upstream 1376320 95993206 ~ 96011204 (+)
LOC110500611 LOC106561734 coding downstream 140703 97528707 ~ 97596323 (+)
LOC110533938 NA coding downstream 217144 97605148 ~ 97606655 (+)
LOC118944222 NA coding downstream 232553 97620557 ~ 97620665 (+)
LOC118944205 NA coding downstream 240273 97628277 ~ 97628490 (+)
LOC110512361 LOC106561728 coding downstream 245637 97633641 ~ 97676623 (+)
G209160 NA non-coding upstream 122202 97263831 ~ 97265322 (+)
G209088 NA non-coding upstream 278470 97108652 ~ 97109054 (+)
G209072 NA non-coding upstream 295707 97087896 ~ 97091817 (+)
G209037 NA non-coding upstream 322856 97055350 ~ 97064668 (+)
G209053 NA non-coding upstream 341391 97045178 ~ 97046133 (+)
G209534 NA non-coding downstream 165 97388169 ~ 97388441 (+)
G209543 NA non-coding downstream 5744 97393748 ~ 97393960 (+)
G209577 NA non-coding downstream 82723 97470727 ~ 97471288 (+)
G209578 NA non-coding downstream 84519 97472523 ~ 97472827 (+)
G209590 NA non-coding downstream 102153 97490157 ~ 97599263 (+)
G208836 NA other upstream 774065 96612429 ~ 96613459 (+)
G208404 NA other upstream 1159061 96227793 ~ 96228463 (+)
G206926 NA other upstream 2681276 94705946 ~ 94706248 (+)
G206908 NA other upstream 2755257 94631829 ~ 94632267 (+)
G206850 NA other upstream 2825300 94557169 ~ 94562224 (+)
G209586 NA other downstream 98472 97486476 ~ 97486772 (+)
G209591 NA other downstream 230613 97618617 ~ 97619089 (+)
LOC110500822 LOC106561728 other downstream 310107 97695939 ~ 97711108 (+)
G209636 NA other downstream 352057 97740061 ~ 97772765 (+)
G209759 NA other downstream 569240 97957244 ~ 97958896 (+)

Expression


Co-expression Network