G209619


Basic Information

Item Value
gene id G209619
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97562329 ~ 97566265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU237359
attttgctcttactgtagtagTGTAGACCACTCCTGaccggtcacattgtacagcaccATGTCCCTCTGCATAGCAGTGCAacctgtgttgctacagatgctggttctaTACCTgtattgtaaactaaaacaacatcagatatggaaacaccatgtccctagtataacatcagatatagaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagctatggaaacaccatgtccctagtttaacattAGCCCTaactatagaaacaccatgtccctagtttaacatcagccctaactatagaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagatatagaaacatcatgtccctagtttaacatcagctatggaaacaccatgtccctagtttaatatcagatatagaaacaccatgtccctagtttaacatcagccCTAGATatggaaacaccatgtccctagtttaacatcagataaagaaacaccatgtccctagtttaacatcagccCTAACTatggaaacaccatgtccctagtttaacatcagctatagaaacaccatgtccctagtttaacatcagccctaactatagaaacaccatgtccctagtttaacatcagatatagacACACCAcgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacat
>TU237361
attttgctcttactgtagtagTGTAGACCACTCCTGaccggtcacattgtacagcaccATGTCCCTCTGCATAGCAGTGCAacctgtgttgctacagatgctggttctaTACCTgtattgtaaactaaaacaacatcagatatagaaacaccatgtccctagttaaGCATcggatatagaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagccctagctatagaaacaccatgtccctagtataacatcagatatggaaacaccatgtccctagtataacatcagatatagaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagccctagctatagaaacaccatgtccctagtataacatcagatatggaaacaccatgtccctagtttaacatcagccctaactatagaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagctatagaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtataacatcagatatagaaacaccatgtccctagtttgaCATCagctatagaaacaccatgtccctagtttaatatcagatatagaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacattAGCCCTaactatagaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacattAGCCCTaactatagaaacaccatgtccctagtttaacatcagccctaactatagaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagatatagaaacatcatgtccctagtttaacatcagctatggaaacaccatgtccctagtttaatatcagatatagaaacaccatgtccctagtttaacatcagccCTAGATatggaaacaccatgtccctagtttaacatcagataaagaaacaccatgtccctagtttaacatcagccCTAACTatggaaacaccatgtccctagtttaacatcagctatagaaacaccatgtccctagtttaacatcagccctaactatagaaacaccatgtccctagtttaacatcagatatagacACACCAcgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacat
>TU237366
AGCCCTaactatagaaacaccatgtccctagtttaacatcagccctaactatagaaacaccatgtccctagtttaacatcagccctaactatagaaacaccatgtccctagtataacatcagatatagaaacaccatgtccctagtttaacatcagctatggaaacaccatgtccctagtataacatcagctatagaaacaccatgtccctagtttaacatcagctatagaaacaccatgtccctagtttaacatcagctatagaaacaccatgtccctagtttaatatCAGATatggaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagatATGGAAACACCATctccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagatacagaaacaccatgtccctagtttaacatcagccCTAGATatggaaacaccatgtccctagtttaacatcagataaagaaacaccatgtccctagtttaacatcagccCTAACTatggaaacaccatgtccctagtttaacatcagctatagaaacaccatgtccctagtttaacatcagccctaactatagaaacaccatgtccctagtttaacatcagatatagacACACCAcgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacat
>TU237357
atgtccctagtttaacatcagctatggaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagatATGGAAACACCATctccctagtttaacatcagatatagaaacaccatgtccctagtttaacattAGCCCTaactatagaaacaccatgtccctagtataacatcagatatggaaacaccatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagctatagaaacaccatgtccctagtttaacatcagctattgaaacaccatgtccctagtataaCATCATGGTGTATGCATTTTGTTCCAGTAGAAAAACAGCTTTAGATCCCcaaggc
>TU237362
atgtccctagtttaacatcagctatggaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagatATGGAAACACCATctccctagtttaacatcagatatagaaacaccatgtccctagtttaacattAGCCCTaactatagaaacaccatgtccctagtataacatcagatatagaaacaccatgtccctagtttaacatcaga
>TU237363
atgtccctagtttaacatcagctatggaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagatATGGAAACACCATctccctagtttaacatcagatatagaaacatgtccctagtttaacatcagatatagaaacaccatgtccctagtttaacatcagctatagaaacaccatgtccctagtttaacattAGCCCTaactatagaaacaccatgtccctagtataacatcagatatagaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacatcagatatggaaacaccatgtccctagtttaacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237359 False 846 lncRNA 0.39 5 97562329 97565311
TU237361 False 1584 lncRNA 0.40 3 97562329 97565311
TU237366 False 749 lncRNA 0.46 3 97563392 97565311
TU237357 False 382 lncRNA 0.49 2 97564117 97566265
TU237362 False 232 lncRNA 0.40 2 97564117 97564855
TU237363 True 361 lncRNA 0.54 3 97564117 97565311

Neighbor

gene id symbol gene type direction distance location
LOC110500594 LOC106561738 coding upstream 474574 97085929 ~ 97087755 (+)
LOC110500585 LOC106561739 coding upstream 477288 97081935 ~ 97085041 (+)
LOC110500557 LOC106561743 coding upstream 534141 96971391 ~ 97028188 (+)
LOC110500533 LOC106561700 coding upstream 1518759 96034220 ~ 96043570 (+)
LOC110500522 gpr22 coding upstream 1551125 95993206 ~ 96011204 (+)
LOC110533938 NA coding downstream 38883 97605148 ~ 97606655 (+)
LOC118944222 NA coding downstream 54292 97620557 ~ 97620665 (+)
LOC118944205 NA coding downstream 62012 97628277 ~ 97628490 (+)
LOC110512361 LOC106561728 coding downstream 67376 97633641 ~ 97676623 (+)
LOC118944214 NA coding downstream 80150 97646415 ~ 97646513 (+)
G209617 NA non-coding upstream 1373 97560112 ~ 97560956 (+)
G209611 NA non-coding upstream 23648 97537589 ~ 97538681 (+)
G209578 NA non-coding upstream 89502 97472523 ~ 97472827 (+)
G209577 NA non-coding upstream 91041 97470727 ~ 97471288 (+)
G209543 NA non-coding upstream 168369 97393748 ~ 97393960 (+)
G209644 NA non-coding downstream 25159 97591424 ~ 97592255 (+)
G209591 NA non-coding downstream 52593 97618617 ~ 97619089 (+)
G209648 NA non-coding downstream 53527 97619792 ~ 97681203 (+)
G209651 NA non-coding downstream 71443 97637708 ~ 97708658 (+)
G209586 NA other upstream 75557 97486476 ~ 97486772 (+)
G208836 NA other upstream 948870 96612429 ~ 96613459 (+)
G208404 NA other upstream 1333866 96227793 ~ 96228463 (+)
G206926 NA other upstream 2856081 94705946 ~ 94706248 (+)
G206908 NA other upstream 2930062 94631829 ~ 94632267 (+)
LOC110500822 LOC106561728 other downstream 131846 97695939 ~ 97711108 (+)
G209636 NA other downstream 173796 97740061 ~ 97772765 (+)
G209759 NA other downstream 390979 97957244 ~ 97958896 (+)
G210408 NA other downstream 1130903 98697168 ~ 98700392 (+)

Expression


Co-expression Network