G209844


Basic Information

Item Value
gene id G209844
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97726939 ~ 97771450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU237659
ctctataccgtaataccctgtatatagcctccacattgactgtaccgtaataccctgtatataacctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataacctgtatatagcctccacattgactctataccgtaataccctgtatataacctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctataccgtaataccctgtatatagcctcctcattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctaccgtaacaccctgtatatagtctccacattgactctgtaccgtaacaccctgtatataacctccacattgactctgtaccgtaacaccctgtatatagtctccacattgactctgtaccgtaacaccctgtatataacctccacattgactctgtaccgtaacaccctgtatatagtctccacattggctctgtaccgtaataccttgtatattgtctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattggctctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatataacctccacattggctctgtaccgtaataccctgtatatagtctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatataacctccacattggctctgtaccgtaataccctgtatatagccctgctgtTGTCATTTACTGCTgcgctttaattatttgttattgttaTCTCATACTCTTTTTGTAGGtactttcttaaaactgcattgttggtaaaggaCTTGGtagaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttctctgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttctctgtgaggtctactacacctgttgtattcagcatttctctgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactactcctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcattacactgtaaggtctactacacctgatgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcattacactgtaaggtctactacacctgatgtattcagcatttcactgtaaggtctactacacctgttgtattcagcattacactgtaaggtctactacacctgatgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgatgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttctctgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacactatattgtaattattcgcctacctcctcatgccttttgcacacaatgtatatagactattttttcccccttttgtttctactgtgttattgacttgtttattgtttactccatgtgtaactctgtgttgtctgttcacactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtaaaataaaataaaaaacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctacctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttctctgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttctctgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttctctgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctacttcacctgatgtattcagcatttcactgtgaggtctaccacacctgttgtattcagcatttcactgtaaggtctacttcacctgatgtattcagcatttcactgtaaggtctacttcacctgatgtattcagcatttcactgtgaggtctaccacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactataaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcatcatttcactgtgaggtctactacacctgatgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctacctacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctacctacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttaactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttaactgtcaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttaactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcattttactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtgaactgTAACATTTGATTTAGAAGGATACAGGGTGTGTACATTATTAGGCTTTTGCGTCAGGtcaaacctaaaaaaaaaaatacctggTCCAACTGAGGTCCTGTCCTTCTTACCTGGAATCTCTGTTTCTTCTCTGTCATCTCAGTCACTCTGCTGATTAAAGACTGTTCCGCTCCCTGCATCTTCTTCATCTCCTGTTTCAGGTTCCCCTGCAAGACAAAAACACAGTGCCGTCATCCTGCCGTCAATAGAAAACATGCTTTAGCTCTCTGGAACACGTATTTATACTATAACGCGTGTGATATGTTTATTCACCACTAACGATCCTTAGACAACATTAATACTACGGCTCATACAGCTGGGATGTGATCAGgtatTTTTGTggtgtgttggtatgtgtgttTGGTAAACACTCCTCTGTTTCTCACCCTCAGCTCCCTCTCGGCCTCTCTGATGCTGACGCAAGCGTGGTCCCGGTGCGACCCGATCACGGTACACacggtacagacacacacactacactgacggCAGTAGATTCGGTTCATCTCCTGGTGTTCCGGGCACCTGATGACCATgacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctgaccgtgctgctgctccagtttaaact

Function

NR:

description
PREDICTED: uncharacterized protein LOC106593042

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237659 True 5755 lncRNA 0.42 4 97726939 97771450

Neighbor

gene id symbol gene type direction distance location
LOC118943868 NA coding downstream 3756 97699305 ~ 97723186 (-)
LOC118944209 NA coding downstream 7166 97719674 ~ 97719773 (-)
LOC118944207 NA coding downstream 9102 97717740 ~ 97717837 (-)
LOC118943869 NA coding downstream 35496 97636136 ~ 97691714 (-)
LOC118943865 LOC106593246 coding downstream 37107 97626323 ~ 97690421 (-)
LOC118936884 NA coding upstream 356498 98127948 ~ 98145517 (-)
LOC110500713 LOC106561713 coding upstream 541573 98313023 ~ 98352485 (-)
lmo2 rbtn2 coding upstream 652565 98424015 ~ 98426658 (-)
LOC110500720 LOC106561717 coding upstream 703284 98474734 ~ 98513861 (-)
edc3 LOC106561715 coding upstream 750548 98521998 ~ 98535690 (-)
G209860 NA non-coding downstream 37834 97652692 ~ 97689105 (-)
G209834 NA non-coding downstream 43183 97647549 ~ 97683756 (-)
G209838 NA non-coding upstream 7646 97779096 ~ 97780558 (-)
G209901 NA non-coding upstream 10607 97782057 ~ 97782475 (-)
G209902 NA non-coding upstream 11251 97782701 ~ 97782951 (-)
G209907 NA non-coding upstream 19723 97791173 ~ 97791393 (-)
G209914 NA non-coding upstream 29547 97800997 ~ 97801343 (-)
G209841 NA other downstream 107727 97618859 ~ 97619212 (-)
G209802 NA other downstream 224545 97501172 ~ 97502394 (-)
G209560 NA other downstream 309751 97416821 ~ 97417188 (-)
G208658 NA other downstream 1304715 96421866 ~ 96422224 (-)
G208472 NA other downstream 1592467 96134077 ~ 96134472 (-)
LOC118943885 LOC106561728 other upstream 1146998 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other upstream 1171024 98936783 ~ 98944041 (-)
G210765 NA other upstream 1254282 99025732 ~ 99026118 (-)
G211127 NA other upstream 1351783 99123233 ~ 99123658 (-)

Expression


Co-expression Network