XLOC_021490


Basic Information

Item Value
gene id XLOC_021490
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 9396668 ~ 9403617 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044782
GAAAATTTCAGTATTTTtattgtcaaaatgtttgtatttacagAAAATCTTCTCATGTTTTTAATTCAGATGAGGAAAGGTACAGAATTCAAGCTCGAAGTTGGCAGAGACATTCAATGTTTCCTACACAAGGATAGAAAGAgtaaaaactgtgtgttgaggcaagttggagatttaagctgcggtcacactagagtttgataatgtgaaattctgtcgtgcggcgctgcgaaaaggggcgagaataaacaagattattaggctttaaaaaagcgagcgattgctccatgttttaaatttctgtccagagaggtcatgttttgatcctcggttggtctcacgcagtcaagtgatgcgatttcgcaggtcagagttcaccaagcttgaaattTGACTCCTATAATGACCCTGTGATTCCAGTCTGATGCAATCGTGtgcatatgaatgaaagtctatggggagaaaagcccagtgtgaccacagcttaaatcTGCAGGACTCCAACCCTCCAGTAcagagtttggaaacccctggttTAAGACTTTAGAACTTGATGCATTGACTTTGCGAGCACTCAAATGAAAATCTCCTAAGGTAAGGTCATTCCCTCTGTTTTTCAGAGATCATGTGACCAAATTTAGAAGAGTAAATAACATCAAGACTAAACGGCTAAGGGACACTTGAAGAGATGATACAGTGTTTGTCTGATATGGGTAAGTGAGCAACTTTAGACTCAGGAAACATTCGAACAGGTAAGAATGGCTTATAAAGATAGGTCTGACTTACATTTCATTAGATTTCACTTGTAAATGTCCTCAAAATGTGTTTTGGCTTCTGTAATCAATTACAGTATTCACTATATAATCAATTTGCAGTTCATTTAACGTTAGCAATACAGACATTGTCTTATTTTCATACTTTTCAAGAAAAAGAGGGGGTCATTAGCTAACAGCAGACTTTTGAAAACATCTATTTTTCCTTAAAAACAGATTATCttgtttgaatttttaaaaaggcACTCTAGTGACCTTCAAAATGACACATGAATGGGTTAAATGAAATGCAAGATACAGTTTCGAGTTAAGAGGTAGCTGTGGGACATATGGCAAGGCTGTAAGGAGGCATTGTTTGAGACATAATAGGCTGGGTTTTTAATATCTGCTCGTGTTTTTTAGCCATACAATTGAGAAATGTGATATTCTGAAACTTTACTAATGCCCGATTTATAAAAGAGCTGACTCAACAAATTCGCATGGCTCGAGAAATGCATACAAAAAGGTTCCtctaatgtactgtcatcaaatCTAGGAAAAGCACCATCAAAAGGCTAGACTTCAGTTTCTGCAGCACCACTCCAACTAGAgattggagaaaaaaaacacattacaaacGTACTCGACGCTTATGCAGGAGCAGCTACAGGGAGGCACACACTCGTATTACAGTAACTGCATAGCTACGTCAACAAACGATCCGCTTATGGATTATATTTGGGATTATCTGATAAAATCTCTCTAATCTCAAAATCTCACTGGGGGCAATTAATTAGCATTCAGTGTTTCAGTAttaaacatatctgtttatatATGTGATATCTGCATAATTAGTATTTTGTGAGACTTAAAATGTGTTCTGGAAAATAGGATTATGGATTTTAGTCAGGGTAAGCGACAATTTAATTTGACACGACTGAGGCTTTGATGGATTGAGGTGCATTCTGGCCTTTTCAATCGTGCCATACTTGGGTCTACATGGTGTCTCATTTTAGAAGGGTGCTCGAGAGCACCCACTTTAAGCCACTATGCGCTTACCACAATTGATAAGTAGCTGACAATCTTTGCATAATTTCGGGCTCAAAGGGTCGATTTAAGAGCGAGATCTAAGTTTAcaaaattttcattcattaattttgcttcagcttagtccctttattcatcagcagattagaccaacaacttatccagcatatgttttacgcagcggatgctgttccagctgcaacccagcactggaaaacacccatacaccttacatttacacacatacactacttccaatttaggccccgtttacactagtgcgttttagtttttaaaagtgGCGTTTTAGATCACAAACGATGCCCGTCCACATTAGCGTtttacctagcgtctctgaacatatctccgtccacactacgccaccaaaaacgtatatcacgtgaccattcgcgcactctgggcatgcacgttctagtataaacagaaagcttGCGTCTTGCTCtgcattttgttattgttagtcaacaaacgcaggttgaacattaaacgcgatggcaaagaaagcaagagaggtatttttgtggacagacgatgaggttgagttgttactaaatgtaacaaatgaatcactgcacaatggcgcctaaaacagacaatagtgcaaacaacgctcccatttctgtgcccatgttgatgtttacagtactgtcttccggtagcgttaaagccatgtgttatagtcatgtgataggggcttgatgaATAAGGGAAGGACACGCAATGACAcgaaagccccaatcaggtagcgaatctcagaagccctgcctccgttttcagatgtctccgtttttcctcatccacactgatgATTTTAGATGTTtgatgttttagaatgaaaacggcctctccagcgttttcaaaacactCCGTGTTTGGCATttgagaactccggcgtagtgtggacggatggcgtaaccttagcaaaacttatgcgttttaaaactaaaacgcattagtgtaaacagggccttagtttattcaattcacctatagcacatgtttttttggtttgggggaaaccggagcacctggaggaaacccacaggaacacgtggagaacatccaaactccacacagaaatgtcaactaacccagctgggacttaacattaaattaaaattggtGTTTACCGTGACTAAGACCCATTTCAGCATGATGACGAAGGTTGAAGAGGTAGACAATGAAAACAATTGCAGAAGATACACCAAGGAACATGTCTTCCATAACCAGGGGGTAGGAATAAAAATGATCGATACACTTTAAAAATCATTACAACATCCTAGCCAGGGAATGAAGATTTTACATGTCAGTGCTCTAATGTCCAAACACTTGAACAGTACAAAGTACCAAAGCAAACATAACAACTGCTATCCTTCTACTCTACAGCTACCAACGTGCTTTTCGTAGACATCTTCAGACAGCATAATAAGAATATCAAGTTTGTAAAAAGGACAGGTTCATAACGTATCTAGTCCTATTTTTAGAGAAATCCAGGGTTGATTAAGAGTTTCATATTTTGGCTGGTTGGAAAATTGAACATGGTCCAAAGTAGTTGCAGAACAGAGGTTGAAACAAGCTTTGCTGGTTTATGATTGTCTGTTGAGATGTGAGCTCAAAACCAAAGTTGAGACCACATTGGATTTCCTGGAAACTTTCTTCATGACCACCAAAGGCAAAGGGAGTCCATTGTAGACTTTTGAAAAAGCTGACTTCGAGTCCACCATGGGCTGGTTATGGGATAATTTTACAGATATTCAAGCAATACTATCTGTAGAATAGAGAAAGGGCCAGTCGGCAGTGAGGGATATTGTTACTCTTACTAAAGGCCATTTTGAGGTTCTAGGTTTTTCTTATTTCATTTGCATGCTGTGCGTTCCCTTTACATCTACATGACTTCAATAAGACCTGGTGTCAACTTGAGTTTGGCTATGCTGTCCTGTTGGCTGGATGACAAACAACGGAATGGCAGAGTTTAAGGTAAAGTCTGACTGGACGATGGTAGAATGGTAGATTTTAAAGGCAGGACAGGCTGGTTTACTCTGGAACAAAGGACATACAATGTGAAATCTGGCTGGCTGACAGTGGAATTGTGGAGGTAAACACTCTCCCCTTCCTTGGCGTTAAAGTGTGCTGGTTACACTGAGGTCTGGTTTGGAAACTCTCCAGATGCACAAACTCTACAAGATCCTATTGTTGTAACCCTGAAGTCTTGTTTTGAAGGTATGAAGTATATACGTAGGTTTGTCTAAgggtgtgtctgtatgtgttggTGTACTTATGTGGCAGTGGATTTGtgtggcagtgtgtgtgtggggtgtgtgTTGACAGttgttttctttgtatatatTTTGGGAGGTGTGAGCAGAAGCTGCCTCATTCCCTCTCGTTAATCATATTGACTCGTTCTTCGTTTCCCATGGATGACTCTTGCACTCGATGCTTGCACTGGCCATGAGTATGTCGTGTGGTAGAGCGAGAGTGGCGGGCAAAACAGGTAGTGACAGTTTGTGAGTTGCAGTCACAAACTGAATCCTGTAAaaagaaaagtttattttttaagactctttaagACATGAACTTGATCCATTCTTTGGAGGAGGAGGGGGTTTGAACAATCAGTTGTTTATGATTAAACAATCATCTAAATCAAGACTGGTGATACTGTTACTTGAATTAGATTGTCTCACCTCCACAGTACTGGAGCTTGAGCTCATTGCATCCTTTCCTGTGGCTACCAGTTCGTCTCTTTGTGTTTTCATAAACCTCTTATTGACTATCTTTGTGATGTTATCTGTGCTGATCAAAGATCCAGGCATGCATTCAGGCTTCGGTTCATCAATTATGCTCACTGATGTTGTCCTGCCGCAAACATTACGAAGAAATTCTTGAACCACTCCGTACTTCTGAGCTCCGGCTTCTCCCAGACCAACGCCGATACTTGGACAAGACGGTTTACCGGCAGCTTGCCTCCCAGGACAAGTATCTGCTTTCCACAATGATTCAACACTTCCAGAGTGTTCCACCACACTGAAGAGACTGGTCAAGCCATCATTGAGTCCACTAAGCACTGGGCTATCACGGGTGGTGGTGGAACGAGCCCAGGCAGAACCATTTTGAGATCCAGTTCGGTTATGCAGATTCCAGACACTGCGATCCCTTGAAGATGTTGATGAGGTCTCGAGTTTGGAGGAGGAGGTGGAAACCCTGCGTGTGAGCTTAGGTGAGCCATATTTGGGAGAGCAACAAGGTCTATCTATGCGACTGTGGACTTTGTCCAAAGATGAAGAGATCTGTCGAGAACGTGCAGATGCAAGTGAGGTGGATGGACGAGGAGACCATGCTTTCCCTTGAAGGCCTCTTGCTGTTGAGATGGGTACATCAGTTTGCATACCAATGCTGACAAACTGTGCAGTCTGCGTTCCTGTACTACAAACACCAACTGTCTGGCTCCCTGTATCTTTGCTGCATTTCCTTTCCAGGGAACTGGAACGAATGGCCTGTCGTACACAATTGGTCATCTCCTTCATGTCATCGCTAAGGTTGCCTGAAATCTCTAATCCATGGAAAGGTGCAGAACCTCCTGTCCGCCCTTCAAGCAGATCTCTGTGCTGCTGTGAAAGTGAACTCAACCACTGCTCGTATGCAGATGGGGAAGTTGTCAATAATGGTGCAGATGCAGCAATCTGACCAGATGGATCTATCATTGCTGCATCCCTAGATGATAGTCCTTGTTGGTAATCCTGCTGTGTGTTTTCTTTGACTGGCCTCCTCTCCATTCTCCTCACTGTCGGAGGACTGTAGTAGATGCGGATGCCCGTCTTATCTGGAGCGGTGTAGCTTCTCTGAATGTACTCCTTGTTCAGCTCCAGCCCTGGAAAGCTGCTGTTAGAGTTGGTGCTTGGGCAGTCCCATGTCTTAAACTGGTCACCCTTCTCCAGTATGGCTGAATCACTGGTCAGGTACTTCCAGTTTTTATTGTTGAGATCACTTAAGTCAGTGCGAGCCAGAATAGAAGCAGGAGCAGCAGATTGGTGCTGTGCCATGGCGTACTCTGGTTCCCCAATGACCTTGTGACTATGAAGGAGTAGACTGGTGTCTAGCAGACTCTTCAACTCAGTGAGGGTGGATATTGATTTGGTCCTGTAGTAAGAGATTGGAAaagattacaaaataataatgccTGATTAAATGGGAATGCAGATTATTTTGTATGAAAGTAATTTTACCTTTGCATTGCTGAACTACCCGCGACTACATCAGCTAAGGCTTCCTTCTCTGAAGTTTTGTCATGGAGAGACTGAAAGAGAAATGATCTATTTTAGTATGTCATGGCCACATCCTGTCACAATACACCCATTCATTTATGTGGCATTACTGAGTCAGCCAATATTCT

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0010608 posttranscriptional regulation of gene expression biological_process
GO:0090085 regulation of protein deubiquitination biological_process
GO:0010467 gene expression biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044782 True 6213 lncRNA 0.42 2 9396668 9403617

Neighbor

gene id symbol gene type direction distance location
XLOC_021489 BX511246.1 coding upstream 39041 9353552 ~ 9357627 (+)
XLOC_021488 CU137717.1 coding upstream 88107 9307574 ~ 9308561 (+)
XLOC_021487 acss2 coding upstream 104776 9230431 ~ 9291892 (+)
XLOC_021486 rps21 coding upstream 168090 9220436 ~ 9228578 (+)
XLOC_021485 si:dkey-66g10.2 coding upstream 185371 9206350 ~ 9211297 (+)
XLOC_021491 osbpl2b coding downstream 104921 9508538 ~ 9551967 (+)
XLOC_021492 adrm1 coding downstream 157180 9560797 ~ 9567306 (+)
XLOC_021493 CR388392.1 coding downstream 214596 9618213 ~ 9618335 (+)
XLOC_021494 CU466281.1 coding downstream 323793 9727410 ~ 9727432 (+)
XLOC_021495 NA coding downstream 462084 9865701 ~ 9865938 (+)
XLOC_021479 NA non-coding upstream 585014 8787995 ~ 8811654 (+)
XLOC_021472 NA non-coding upstream 1961352 7402807 ~ 7435316 (+)
XLOC_021470 si:dkeyp-73a2.2 non-coding upstream 2040888 7350170 ~ 7355780 (+)
XLOC_021469 NA non-coding upstream 2190473 7204539 ~ 7206195 (+)
XLOC_021497 NA non-coding downstream 534628 9938245 ~ 9952826 (+)
XLOC_021503 BX323028.1 non-coding downstream 1197707 10601324 ~ 10606546 (+)

Expression


Co-expression Network