XLOC_021498 (zgc:171775)


Basic Information

Item Value
gene id XLOC_021498
gene name zgc:171775
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 10146542 ~ 10165033 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042719
GGTCGAGCAGCGCGGTCACGGAAGCGGACACGCGGATCAGGTGCACAGTCTGAAGGTGTTCATGGCTTCCCCTCTGAAAACGGGCTTCCACAGACTGGACATCCAGAAAACTACGTGGGATGTCCCTGACCGATACACCTCTCTCAAGCCTGTTGGGTCTGGAGCTTATGGGACAGTGTGTTTTGCAGTCGACCAGAAGACCAAGGAAAAGGTGGCCATTAAAAAGCTGTACAGACCATTCCAGTCTCTGATCCATGCTAAACGAGCCTATAGAGAACTCCGGCTGCTGCGTCACATCCAGCATGACAATGTGATCTGCCTGCTTAATGTCTTCACCCCTGATTCTTCGCTGGAGAAATTTGATACGTTCTATATGGTGATGCCTTTTGTAGCTCAAGATCTTGGACACATAATGAAGAGGAAACAATTAACCAGCAATGTCATCACTTACTTGTTCTATCAGATACTGCGAGGACTAAAGTATATCCATTCTGCTGGGATCATTCATCGGGATCTTAAGCCTAACAACCTTGCAGTGGATGAAAACTGTGAGTTAAAGATCCTGGACTTTGGACTGGCAAGACACACTGAAACTGAGATGACGGGCTACGTGGTGACACGCTGGTACAGAGCACCTGAAGTCATCTTCAACTGGATGCATTACACTCAAACAGTCGATGTTTGGTCTGCTGGCTGCATCCTGGCTGAGATGATAACAGGAGAAGTGCTTTTCCCAGGCAGTGACAGTATTGACCAGCTGAAGAAGATCCTCAATCTGACAGGGACACCAAACTCAACGCTGGTTCTGAAAATGCAAAGCAAAGATGCGCAGTCGTATGTCCGCTCTCTTCCAGTCCAAAAGAAAAAGGCCTTCAAAGAGGTGTTTTCTGGAATGGATCCAAACGCCATCGATCTGTTGGAAGGTATGCTGGTTTTGGACCCAGAGGTGAGACTTTCTGCAAAAAATGGCCTTTCACATCCGTACCTCTCTGAGTTTCATGACCCTGAAAATGAGCCCGTGTCTCCTCCATATGATGATTCCTTTGAGAGTATGGATCTGGCTGTCAGCGAATGGAAAAGTCTTATCCACATGGAAATCATGACATTTGACCCCAACAACCCCAGAGTGACTGCAATGTAATACCTTATTTTCACATTGGGAGAACAACACATACTCCAAACAGACTCTGGAAAACTGTCTGCTTGCTAAGATGTGATATATTGGAAAAAACCCCAGCTCCAAGTCATTTTTGTTGAGATTACTGTCACAACAACTATTTTTAAGCAGTGTTTGTTAATATTACACATTTAGAAGAAGGCTAAAGTGTAGAGTTTGACCGTTTTTGATACTACGCAGATTCTAAATGGTGCTGCAAGAGTAGGGGTTGGTGagggggactattttcaggtgctgcataatatcattgtgcctgcttcagccatggtactgcagcaaagttccttgattattacgccagaattaGATTGTATTTCTCAGCAAAATCAACCTAGAAAATAACAACTTATCATTTTTCGATGGCTTTTTTGTGGTCTCTATGTACATTTTATCTCCATGTATGTCATTTGTTTAGAATGAGATTTGGatatgttgttgcttttttgatAGTATTACAACACactgtgagtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtacatctTATCATTTTCCTTTGGATCTTATACAGTAAAGTGTTTGATAAACTGTTTCACGGCATCAGACTTAATAAGCAGTttactttttacagtttttctgaattgctttggCTCTAATTTtgattgatatttttatttttcaaaacagtaaATTTTAAATCTCTGCACAATTAGCTTATTGTTCACTTCAGTGTGGCATTTCATATTGATTtaagcaaattgcaaatgctttggcacatgtgtgcaaacaaaaaaaaaatttgcaaatgGCTTGTTGATCAAAACTAATGAGCCAATTCTCATTTAAACTGTCAAACTCTTCACAACTTCTCAATAATTTTTCATCGTTCATCGTCACACTCAAAACTATTTATTCAATTATCAAACATTTGTATATGCAcatagggcgacacagtggcgcagtgggtagcacgttcgcctcacagcaagaagctcgctgggttgctggttcgatcctcggctcagttggcgtttctgtgtggagtttgcatgtctccctgcgttcgcatgggtttcctccggtttcccccacagtccaaagacatgcagtacaggtgaattgggtaggctaaattatctgttgtgtatgagtgtgtatgtgtggatgtttcccagagatgggttgcggcgtgaaaacttgcttgataagttggcggttcattctgctgtggcgaccctagattaataaagggactaagccaacgagaaaatgaatgaatgaatgtatatgcaCATTGTTGGAATATCTAGTCAATtccatgttcaataaaaaaggcaaaaaaaatcgTAGTAATTTAtcggatacaaatgaataatttgattcacagatcgattctgttatcctcaatgtaatgcaaaagttacattcaggaggtgcatAGCAATTTTCATTTTCTGATTAGCGCATTTATAGTGAAattcacttgtcaatcattctccagtccaCCATTGGCTGCACCCATACATtcgtcctctttttctacgaattctctgcacaacattaaaagcataagactttctcaactgcacatattctgtgttcagtttcaacACATCTCTGCTTACAGGACATTcagctgcagagctcaagttaattttagacaattaGGTTTTTGCATTTCTATCAGTTTCATCtatttctgcaaaaatgcttctttAGTATGCAAAGCATATCACTCTCAACATAAGAAGTTCAGTTTATATAtcacctttaaacaacacaaatacagttaatgaaaaaaagagacaaaaatcattgaaaatatattccttttttcACATAATATGTTTACACCATAAATTTTTGAGATTGACATTGTTTGTAATGTCTGCTAAATTGGCAAATTACCTCTACTTGCAGTACCTTGCGTTATCTATTTATCATATATGGTACAAAActacttatatgtatatatattataggtgggcatagattcattttttaatctagattaatctcagaATTAATCtatattaatctagattaaaatggctcatttgaattctgctgaaggcattcagaatatgtgtgctacccaaataataagtctttgagaacggatTTCTCAAGCCAGCATCACAGTGCATCACAATGTGATGCAAATACATTTGATGTTTTGTTGGCCTTGGCCAAATTACTGACACATTAACTAGACTTTGAAGCATTTTTGGGTTTTAATTGAGTAACTATATTTTGCAGACATTCAATAAAGGTCTGAAGGTCCAACAAACAGTTTTGATATttgcactcagagtttagagaatgttaagtctgttttgaaaaatgtgccaaagcaattgagaaaaactgtaatccaATGCCATTGGCtggataaaacatttaaagggatagtttaacccagaatgaaaatttgctgttaatttactctccctcagaTCACATCAAGATGtaagtgacttttattataattttttaaaattataattttatttagctCAAACTGTTCTCCATGATAATTCGTAAAAAGCATATTGTTATTTTGAAGTGTGACCACTACCCCTAAATTAACAGCAACTTTTCATTCAATTTTATCACATTTTCATCATTAAGTAATGTTAACTAGCTATCTTCAAAGAAAGATGTTATATACCATGTAAACGTGTGAAACTTGTCTGTTTGTTAACCaactttttaaaagaattttaaagcataaatatttgAATGTAATAAAATGAAGTTTTGTGTTCATAA
>TCONS_00042720
CGCGGTCACGGAAGCGGACACGCGGATCAGGTGCACAGTCTGAAGGTGTTCATGGCTTCCCCTCTGAAAACGGGCTTCCACAGACTGGACATCCAGAAAACTACGTGGGATGTCCCTGACCGATACACCTCTCTCAAGCCTGTTGGGTCTGGAGCTTATGGGACAGTGTGGTGATCTGCCTGCTTAATGTCTTCACCCCTGATTCTTCGCTGGAGAAATTTGATACGTTCTATATGGTGATGCCTTTTGTAGCTCAAGATCTTGGACACATAATGAAGAGGAAACAATTAACCAGCAATGTCATCACTTACTTGTTCTATCAGATACTGCGAGGACTAAAGTATATCCATTCTGCTGGGATCATTCATCGGGATCTTAAGCCTAACAACCTTGCAGTGGATGAAAACTGTGAGTTAAAGATCCTGGACTTTGGACTGGCAAGACACACTGAAACTGAGATGACGGGCTACGTGGTGACACGCTGGTACAGAGCACCTGAAGTCATCTTCAACTGGATGCATTACACTCAAACAG
>TCONS_00042721
TCTGAAAACGGGCTTCCACAGACTGGACATCCAGAAAACTACGTGGGATGTCCCTGACCGATACACCTCTCTCAAGCCTGTTGGGTCTGGAGCTTATGGGACAGTGTGTTTTGCAGTCGACCAGAAGACCAAGGAAAAGGTGGCCATTAAAAAGCTGTACAGACCATTCCAGTCTCTGATCCATGCTAAACGAGCCTATAGAGAACTCCGGCTGCTGCGTCACATCCAGCATGACAATGTGATCTGCCTGCTTAATGTCTTCACCCCTGATTCTTCGCTGGAGAAATTTGATACGTTCTATATGGTGATGCCTTTTGTAGCTCAAGATCTTGGACACATAATGAAGAGGAAACAATTAACCAGCAATGTCATCACTTACTTGTTCTATCAGATACTGCGAGGACTAAAGGTCTGCCTTCTTCATGTTACTTCATACTTTTAATTTTTCCTGG

Function

symbol description
zgc:171775 Predicted to enable MAP kinase activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4309 Predicted to enable MAP kinase activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDARG00000058381

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042719 False 3962 mRNA 0.37 12 10146542 10165033
TCONS_00042720 False 534 nonsense_mediated_decay 0.48 6 10146552 10158901
TCONS_00042721 True 452 lncRNA 0.45 4 10146614 10156528

Neighbor

gene id symbol gene type direction distance location
XLOC_021497 NA coding upstream 193716 9938245 ~ 9952826 (+)
XLOC_021496 slc16a7 coding upstream 257212 9867483 ~ 9889330 (+)
XLOC_021495 NA coding upstream 280604 9865701 ~ 9865938 (+)
XLOC_021494 CU466281.1 coding upstream 419110 9727410 ~ 9727432 (+)
XLOC_021493 CR388392.1 coding upstream 528207 9618213 ~ 9618335 (+)
XLOC_021499 krt18a.1 coding downstream 182818 10347851 ~ 10351754 (+)
XLOC_021500 krt18a.2 coding downstream 187888 10352921 ~ 10355552 (+)
XLOC_021501 eif4ba coding downstream 231809 10396842 ~ 10453077 (+)
XLOC_021502 tns2a coding downstream 304922 10469955 ~ 10587257 (+)
XLOC_021503 BX323028.1 coding downstream 436291 10601324 ~ 10606546 (+)
XLOC_021490 NA non-coding upstream 742925 9396668 ~ 9403617 (+)
XLOC_021505 NA non-coding downstream 1059091 11224124 ~ 11224605 (+)
XLOC_021508 CR735125.1 non-coding downstream 1770551 11935584 ~ 11935700 (+)
XLOC_021510 AL929345.3 non-coding downstream 1918524 12083557 ~ 12083671 (+)
XLOC_021514 NA non-coding downstream 2094503 12259536 ~ 12279048 (+)

Expression


Co-expression Network