G210276 (scamp5)


Basic Information

Item Value
gene id G210276
gene name scamp5
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98846805 ~ 98854673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU238241
CTTGTAGATGGGTCTGAACCAGCACACGTAGGAACAGGGGGTGAACAGGATGAGCCACAGAATGGCCATGCCAAAGTTAGTGGCTCCACCCCCGCCGCACATCCACGCCAGGCAGCCAATCAGATTGACCGCCAAGGTGGCACTGTTAAAGATCCATAGGTAGTACAGCTTCTTGCACATGGAACGGTGTACGTCTGGGATCTCGTTAAAATCCTGATAGAAACATGGCCTCAGAGGGATGAAGCGAGGCAGGGGAGGGAAATTGTTTTCTGCCATTACAACTGGATCTGTCCCTCCAGTTGAAAATAAATATGATCCAACACCCAATTGCCTTGGAAATTAAAACTCCTTTTGTTTCCCCCACAAACCAGCAGTGCTGACACTATGCAACGTCTGTCAATTGCATTGTATGACGATATTCTTCACGAAACAATAATACGCGCTTGTGAAAATAATCGAGAGACAGAAATTCAAAATTCGACTAAAATCAGAAATGTCTTCACCCACCGACAGCTTGGGAGTAGAACGCAATCACGTGACGTCACgtttc

Function

symbol description
scamp5 Involved in positive regulation of cytokine production; regulation of vesicle-mediated transport; and response to endoplasmic reticulum stress. Located in Golgi apparatus; plasma membrane; and recycling endosome membrane. Is integral component of membrane.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238241 True 550 lncRNA 0.47 4 98846805 98854673

Neighbor

gene id symbol gene type direction distance location
LOC118936885 NA coding upstream 46936 98798732 ~ 98799869 (+)
LOC110500756 pk coding upstream 213697 98613750 ~ 98633108 (+)
LOC110500731 LOC106561719 coding upstream 274041 98540412 ~ 98572764 (+)
gp137 gp137 coding upstream 392839 98437885 ~ 98453966 (+)
LOC118943874 tspan18 coding upstream 577362 98161662 ~ 98269443 (+)
LOC110500657 parp16 coding downstream 12 98854685 ~ 98868361 (+)
LOC110510476 LOC106561728 coding downstream 43822 98897524 ~ 98944948 (+)
LOC118944192 NA coding downstream 52769 98907442 ~ 98907622 (+)
LOC118944193 NA coding downstream 75684 98930357 ~ 98930537 (+)
LOC118943887 NA coding downstream 94803 98949476 ~ 98950379 (+)
G210472 NA non-coding upstream 11619 98834872 ~ 98835186 (+)
G210466 NA non-coding upstream 22344 98822259 ~ 98824461 (+)
G210465 NA non-coding upstream 24625 98820626 ~ 98822180 (+)
G210422 NA non-coding upstream 26949 98813477 ~ 98819856 (+)
G210455 NA non-coding upstream 38469 98796761 ~ 98808336 (+)
LOC118944187 NA non-coding downstream 4673 98859346 ~ 98986848 (+)
G210310 NA non-coding downstream 18272 98872945 ~ 98873726 (+)
G210284 NA non-coding downstream 19667 98874340 ~ 98914132 (+)
G210480 NA non-coding downstream 23165 98877838 ~ 98941123 (+)
G210483 NA non-coding downstream 38769 98893442 ~ 98894115 (+)
G210408 NA other upstream 146413 98697168 ~ 98700392 (+)
G209759 NA other upstream 888969 97957244 ~ 97958896 (+)
G209636 NA other upstream 1074040 97740061 ~ 97772765 (+)
LOC110500822 LOC106561728 other upstream 1147029 97695939 ~ 97711108 (+)
G209591 NA other upstream 1227716 97618617 ~ 97619089 (+)
G210484 NA other downstream 48115 98902788 ~ 98926406 (+)
G210823 LOC106561768 other downstream 382705 99237378 ~ 99238258 (+)
G210983 LOC106561766 other downstream 865506 99720179 ~ 99721983 (+)
LOC110502581 LOC106561777 other downstream 950495 99777695 ~ 99818794 (+)

Expression


Co-expression Network