XLOC_021499 (krt18a.1)


Basic Information

Item Value
gene id XLOC_021499
gene name krt18a.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 10347851 ~ 10351754 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042722
GTCCTGTGCTCTGCTCTGCTGTGTTACTGAGCTCTACCTCTCTCCAGGCCTTCATTCACTCGTCTGCTCACTTACACCAGCGACCATGAGTCTGAGAACAAGCTACAGCGTGCGTTCCTCCACCTCCCAGGTGCCAGTGTCCCAGGTGTCTATCAAGCGCACCACCAATGTGCCGACTTACAGGGCTGCGAGCATCTATGGCGGCGCTGGAGGCCAAGGAACCCGCATCTCCTCTGCCTCCTACTCAGGAGTCCGCAGTGGACTGGGAGTTCCCTCGATGTCCAGCTCCATCCAAGTGAGTGCAAGTGGTAGCACAGGCGAGATCATGGGCAATGAGAAGATGGCCATGCAGAACCTGAACGACCGTCTGGCCTCCTATCTGGAGAAAGTGAGGATCCTGGAGCAGGCCAACAGCAAGCTGGAGCTGAAGATCCGGGAGGCCCTAGAGAAGAGAGGTCCTGATGTCCACGACTACAGCCGCTTCCAGCCAATCGTTGATGAGCTGCGCAAGAAGATCTTTGATGCCACCACAAACAATGCTCGTCTAGTGCTCCAGATTGACAACGCCCGCCTGGCAGCTGATGACTTCAGAGTCAAGTATGAATCTGAGCTGTCCATCCGCCAAGGTGTGGAGGCCGACATCACCGGCCTAAGAAAGGTCATCGATGACACCAACCTGAACCGCATGAACCTTGAGAGCGAGATCGAGGCCCTCAAAGAAGAGCTCATCTTCCTTAAGAAGAACCATGACAATGAGGTAATGGAGCTTCGTAACCAAATCTCCCAGTCAGGAGTGCAGGTGGATGTTGATGCTCCTAAGGGACAAGACCTTTCCCAGATCATGGAGGAGATCAGAGCCAAGTACGAGAAGATGGCCCTGAAGAACCAGGAGGAGCTGAAGGCCTGGCATGAATCTCAGATCACAGAGGTTCAGGTACAAGTCACGCAGAACACAGAGGCCCTCCAGGGTGCCCGTTCAGAGGTTAACGAACTTCGCAGACAAATTCAGACATTGGAGATCGAGCTGGAATCACAGAAGAACCTGAAAGGGTCACTGGAGGGAACTCTGCGGGACACAGAAATGCGATACAACATGGAGATCGAGAATCTCAACACTATCATTCTGCAGCTGGAGGCTGAGCTCACACAACTGCGCGGTAACATCCAGCATCAGACGCAGGAGTACGAGGCTCTGCTGAACATAAAGATGAAGCTGGAGGCAGAAATCGCCACCTACAGGAGGCTACTGGATGGTGGAGACTTCAAACTCCAGGATGCTCTTGAAGAGCAGAAGAAGGTCAAAGTGATGACGGTCACGCAGACGCTGGTGGATGGAAAGGTTGTGTCCTCAAGCACAGAAACCAAGGAGAGGAAACTTTAAACATCCAATTTCAGATGATGAGCCGCAACACATCAGAAAAACCTCATGGGCTATTGATAAAACGATCTTACAACTTAACACATTAGATACTGTGTCTATTTATTCCAAAGTGCCTTATTGTAAGCATCTCAAAGCACATGTTGTGTGCAATGAGATTTAGCCAGTACATttcaacattaattaaaaaaaacttacattttaataaCTACATCCAAAAAAGACCAAAGGTCACAGAACACTACGAAAACCTTTTAGATATTTTTGTAATGACAGTAAATGTTTACGATCACCAATTGTTCCATTTTGTTCTATGTTGTGTTGTTGTCATGATGTCTAGTCTTTTCCAATAAAAGACACTTTTAACAAAT
>TCONS_00042723
CTGAGCTCTACCTCTCTCCAGGCCTTCATTCACTCGTCTGCTCACTTACACCAGCGACCATGAGTCTGAGAACAAGCTACAGCGTGCGTTCCTCCACCTCCCAGGTGCCAGTGTCCCAGGTGTCTATCAAGCGCACCACCAATGTGCCGACTTACAGGGCTGCGAGCATCTATGGCGGCGCTGGAGGCCAAGGAACCCGCATCTCCTCTGCCTCCTACTCAGGAGTCCGCAGTGGACTGGGAGTTCCCTCGATGTCCAGCTCCATCCAAGTGAGTGCAAGTGGTAGCACAGGCGAGATCATGGGCAATGAGAAGATGGCCATGCAGAACCTGAACGACCGTCTGGCCTCCTATCTGGAGAAAGTGAGGATCCTGGAGCAGGCCAACAGCAAGCTGGAGCTGAAGATCCGGGAGGCCCTAGAGAAGAGAGGTCCTGATGTCCACGACTACAGCCGCTTCCAGCCAATCGTTGATGAGCTGCGCAAGAAGATCTTTGATGCCACCACAAACAATGCTCGTCTAGTGCTCCAGATTGACAACGCCCGCCTGGCAGCTGATGACTTCAGAGTCAAGTATGAATCTGAGCTGTCCATCCGCCAAGGTGTGGAGGCCGACATCACCGGCCTAAGAAAGGTCATCGATGACACCAACCTGAACCGCATGAACCTTGAGAGCGAGATCGAGGCCCTCAAAGAAGAGCTCATCTTCCTTAAGAAGAACCATGACAATGTGAGTACACATCTGGCACATCTGGAAAC
>TCONS_00042724
TGTACTCATCGTAGACATTCGGAATTGAAAATTCAATCCTTAACTCTTGGGTTATGATTGTTGCGATTTTCAGAAAGGGTCACTGGAGGGAACTCTGCGGGACACAGAAATGCGATACAACATGGAGATCGAGAATCTCAACACTATCATTCTGCAGCTGGAGGCTGAGCTCACACAACTGCGCGGTAACATCCAGCATCAGACGCAGGAGTACGAGGCTCTGCTGAACATAAAGATGAAGCTGGAGGCAGAAATCGCCACCTACAGGAGGCTACTGGATGGTGGAGACTTCAAACTCCAGGATGCTCTTGAAGAGCAGAAGAAGGTCAAAGTGATGACGGTCACGCAGACGCTGGTGGATGGAAAGGTTGTGTCCTCAAGCACAGAAACCAAGGAGAGGAAACTTTAAACATCCAATTTCAGATGATGAGCCGCAACACATCAGAAAAACCTCATGGGCTATTGATAAAACGATCTTACAACTTAACACATTAGATACTGTGTCTATTTATTCCAAAGTGCCTTATTGTAAGCATCTCAAAGCACATGTTGTGTGCAATGAGATTTAGCCAGTACATttcaacattaattaaaaa

Function

symbol description
krt18a.1 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in several structures, including EVL; cardiovascular system; gall bladder; head; and pronephric duct. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to human KRT18 (keratin 18).

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030411-6 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in several structures, including EVL; cardiovascular system; gall bladder; head; and pronephric duct. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to human KRT18 (keratin 18).

Ensembl:

ensembl_id ENSDARG00000018404

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042722 False 1749 mRNA 0.49 7 10347851 10351754
TCONS_00042723 False 757 processed_transcript 0.55 3 10347877 10350429
TCONS_00042724 True 596 processed_transcript 0.44 2 10350891 10351573

Neighbor

gene id symbol gene type direction distance location
XLOC_021498 zgc:171775 coding upstream 182818 10146542 ~ 10165033 (+)
XLOC_021497 NA coding upstream 395025 9938245 ~ 9952826 (+)
XLOC_021496 slc16a7 coding upstream 458521 9867483 ~ 9889330 (+)
XLOC_021495 NA coding upstream 481913 9865701 ~ 9865938 (+)
XLOC_021494 CU466281.1 coding upstream 620419 9727410 ~ 9727432 (+)
XLOC_021500 krt18a.2 coding downstream 1167 10352921 ~ 10355552 (+)
XLOC_021501 eif4ba coding downstream 45088 10396842 ~ 10453077 (+)
XLOC_021502 tns2a coding downstream 118201 10469955 ~ 10587257 (+)
XLOC_021503 BX323028.1 coding downstream 249570 10601324 ~ 10606546 (+)
XLOC_021504 ppp4r2a coding downstream 453434 10805188 ~ 10827419 (+)
XLOC_021493 CR388392.1 non-coding upstream 729516 9618213 ~ 9618335 (+)
XLOC_021490 NA non-coding upstream 944234 9396668 ~ 9403617 (+)
XLOC_021505 NA non-coding downstream 872370 11224124 ~ 11224605 (+)
XLOC_021508 CR735125.1 non-coding downstream 1583830 11935584 ~ 11935700 (+)
XLOC_021510 AL929345.3 non-coding downstream 1731803 12083557 ~ 12083671 (+)
XLOC_021514 NA non-coding downstream 1907782 12259536 ~ 12279048 (+)

Expression


Co-expression Network