XLOC_021501 (eif4ba)


Basic Information

Item Value
gene id XLOC_021501
gene name eif4ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 10396842 ~ 10453077 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042726
ACATTACCCAAAATTCTAAATGCGCAGTGGTGTCTACGCGTCGACGTATCGCTGCAAGACACGCCCCCATCCGGGCATATGACACGCACTCCTTCTCCAGCATGGCGGCTTCAGctaaaaagaataagaaaaaggGTAAGACCCTTACCCTGACTGACTTTTTAGCAGAGGACAGTGGTGGAAATGCTCCACCCAGTTATGCGCCCCCGAAGCCCACGAGCTGGGCCGACGAGACCGATGACCTGGAGGGAGATGTTACTACATCCTGGCACACAGAAGATGAGGTGTATCGCGCACCACCTATCGATCGCTCAATTCTGCCGACTGCTCCACGTGCTGCACGCGAGCCCAACGTGGACCGCTCTCGTCTGCCCCGCAGCCCTCCTTACACCGCCTTCCTGGGCAACCTTCCCTACGACGTCACCGAAGACTCCATCAAAAACTTCTTCCGCGGACTCAGTATCAGTGCTGTTCGCCTCCCGAGGGAGCCAAGTAACCCAGAGCGGCTTAAAGGCTTCGGCTATGCAGAGTTTGATGATGTGGAGTCTCTTTTACAAGCGCTCAGCCTCAATGAAGAGAACCTTGGAAATCGTAGAATCCGTGTAGACATCGCTGACCAGTCCAACGAAAAAGAGAGAGACGATCGCTCTGTGTCTGGCAGGGATCGTAACCGCAGTGACCGAGACATGGGCCCAGATAAAACCGATTCAGACTGGAGGGCAAGACCTAAATCTGAAGCCGACGATGGACCACGCAGAGATGATGCATTTGCAGAGCGTTCCAAAGACCGATATGATTCTGACCGTCACCGTGAAGGTCAGCGGTGGGACAATGATCGTTATGATGGAGGAAGAGACAGATACCGGGAACGATATGATGACAGAGAGCGCAGAGACTATGACAGAGGCTTTGATTCACGCAGTGGGGGACGGCGACCCTTTGGAAGCGGCTTTCGGCGTGACTATGACGATCGGCGGGATGATTTTCGGGGCAGTGGAGACAGATATGGTGACCGTGAAGAGAGATTCGAAAGGCGGGATGAGAGGCGTGACGACAGAGGCCCTCCTCAGAGGCCCAAGCTGAACCTGAAGCCTCGGAGTGTTCCTAAAGATGAAGAGCCATCCCGGGGGCCTTCAGCCTCCTCTGGACGGGCTGCGTCCATCTTTGGTGGAGCCAAACCGGTGGACACTGCTGCTAAAGAGAGGGAGGTGGAGGAGAGGCTTAAGAAAGAGCAGGATAGACTGCAGAGACAGCTGGAAGAGGACAAGAACAGAGGACCTGAACGCAAACCCAGAGAGAGACATCCCAGCTGGCGTAGCGAGGACCAAGGAACCGAACGCTCGCGGACAGGAAGCGAGTCATCACAAACGGGAAACCCACCAAGCAGGGGGCAGAGGCGTCGGGAAAGTGAACGTTCTGTAGAAAACGAGGTATTCAGCAGCCGTGATGAGGAGCTATCCTCTCATGGAAGTCAATCTCCTGCCTCAAAACAGGAAGCTTTGCCGCTGAAAGTTGTTCCAGCGCCACCACCGAAAGAGAACGCTTGGGCCAAGAGGAGCGCCATGAGTGCAGGATCCACTGAGAGCGATAGTAAACCCGCCGTTTCTCCCAGCAGCGCCGCTCCACCTAGAAGCTTGCCAGGCTCAGGGGATGTTCCTCAAAGAAATAAAGATGAAAACAAAGCAGATGGGGTGCGGCGGGATCGGGGCCCCTCTCGGGGTCGCGGTGGGGCCTCGGGCTCTGGAGCAGGCAGGGGGCGTGGAGACGCAGCCAGCCGAGACCGAAGGAAGGAGACAGACAGAAAGGACGCAAGAAGAGAGCGAGATCTCAGACCAGCACCAGAGCCAAAGAAATTTGAGGAGTCTCCCAGTCCTAAATTCAGCTCAGCCAGTAAATACGCAGCCTTGCTGATGGACGGAGAGCAGGCAGGAGAGGAAGATGGTGGAAATTAAGACGGACTGCAATTTTAATTACCAATTAAACCTACAGCTTTTGTTTCATGCAGCACCGAAGGACCCAGATGAGCCCtttgagagcaaaaaaaaaaaaaacattttagagcaAACCCCTTCCTCTTCAGGACTGAACCGAAAACCTTGTGTGAAAATCCAGGACTTGTTTTAAAGTAAAGAGAGTGGAGGAATGAATGCTTTTGACTAATTAAAATGCAAAGGAAAAGGATCCTGCATACATCATACATTGAGAGTGCATTTTCTCCTTAGCTTGATCGCACGTTGAGCGACCGGAAGATGTAAAATCAGGGGGAAAGTGCCACGAGATGAATGTTTTCCCTGATCTTTAGGGCTTCCTGAGCTTTCTTAAAGGACGTTTACAGTAGATGCTTTTCCGAGATCTTCGGTCAAGTAAAGCGGTCTGTGATCTGCATTGGTTATAAATCTCACAACCTTGGTTTAATGTCTTTAAACTCAAACCCGGTCCCTTGATTTGCATTCAGGGGCTTTCAGATCAGGTCAGAACCTGTTAGTTTCGGTTTGATATTTCTCCGCGTGGCTTTAAGCAGGAGTCTCCCGTTTTTATCTCATTTATCCTTTGAGGACTTTTTAAAGCCACTCCTTTGGACTGATGTGCAATAGGAATTGAAGTATTCCTCTGAATCTCCATGTTTCAACAACAGAGACTGCTGCAGCTTTGGGTTGAACATATATCTAAAGGTAGTGACATGAATTGCTTATTGATATAAACTGTGTACCATCTgaaaaaacaaaccaataaaagaCCATGAGTCATGTATGGTTTGGAGGACATTGTCAATCACGATGCATTGCAGAGTTTGAGTATTATTAGTCGATATGCGATGAAATGCAGCAGAAAGTGCTTTCTAATGTCATTATTTTTAGAGTTGTTATGCATTAGCATCTAaaattgactttttgttttctacAATATTGCAAAGAAAGCttttgatgaaaataataatacaaaatacggatcatttcatttttgttgttagtttttttttcttttttttattgacaataCATAGTATTTGCCAAAATCAGACATTTTAAAggggcggcgcagtgggtagcacgttcgcctcacagcaaggtcgctggttcgatcctcggctcagttggtgtttctgtgtggaatttgcatgttctcccggcgttcgcgtgggtttcctccgggtactccggtttctcccacagtccaaagacatgcggtacaggtgaattgggtaagctaaattgtccgtaaggtatgagtgtgtgtgtgtatgtgtggatctttcccagagatgggttgaggctggaagggcatccgctgcataaaaacttgctggataagttggcggttcattccgctgtggtgacaccagattaataaagggactaagtcgacaagaaaatgaatgaatgagacattttaaaattacatttatatttctttCGGGTTTCTTGCTAAATTGTACATTTATGAATGTCAGTTATGAGTGTTTTTaagatgtttcaagagttcactcttagctgatgattgataaagtgtgtttggcatgctgtcctgggagtgagccctgagctcagaacatcttcgagcccggggctccctcccatttgaagagcgagaggggagtttgagcttaggtcttgagaactcccctgcttgtaaACGTGTTAGGAATAGCTAAGATATAGCTGGCTAAGAGTTGTcttacactcttagaaataaaggagagctgtcactggggtggtacctgtTTAAacggtacaaatttgtacctaaaaggtccatagtaacacctcaagggtacatattagtaccttaaaagtacaaaagtgttcctcttcaaATTTTTTGGTTCTTATATATACTTTTAATgtaccaaaatgtaccttttcaGTAAAAACGTGTGCCTTTTGAAAacgtaccaccccagtgacagctcttgtaccttttttctgagagtcTAGGATGCtactttggattagtcaatttaatTATGATATATGTCTTTGGATGTTGTGAGGAAACTGggaaacccggggaaaacccacacgagcatggggagaacatgcaaactccgcatagAAACGCAGACTGGCCTGGTGAGGGGTCAGATCTGtggcgttcttgctgtaaggcaacagtgctaaccactgtgctgctGTGCCGCCCTATCAGGAGTagtggaggagtaggggtggaagggggattcaaGACGAAGGTGACTGAAGTGGAGAAAACTGTTATTCATATTGAGTCAGTAATTATCTGATTGGTGCAATATGCAAAGCGGATaggggaccagctgtgatcaatcataaggccatgatcctctcaaaattagtttattgataaaccacacttaaagtccccatgaaatcaaaactaaccatatgattttgttagctcacattgctagttttgtggtaaacaattcatctgtgcatgtctttaagaaataaaaaatgtttgcccTTCTATTCTTTTATTGAGgtctgaaaatgcactttctgatttttgttttcagttaaattgtcagattacataTATCTTAAGAATTGGAATCCAACTGTCCGCTTTATCAATCAATCCAAcggtcagttttgacaacaaacagaaatggtgagggggagagaagtctgttaggttgtaacaactttccccaaacccttttccccatctttctaaATGAACATCTACATCCTTTGAACATGAACTTTATTACATCCactcagctcgcagtagaaaaatacaagccacacccactgttttctcatttataaTCCCTTTTGTCTAGGAACTGTCAAAATACAGTCGCAGCTTtcagttcatgtggactttaaataaGTCTTAAACTCATCAAGGTTTCATTTGATTAAAAcaatttttgtattcatttttgtttaaaatttttgttttataaagtaatttttgCAATAAAAAGGTTGAAAGTAATGTTTGTGGAACCATTGCTtccatacagttaaagtcagaattattagccccccactgaattattagcccccctgtttatttttttcccaaatctctgtttaatggagagaagatttttctcaacacatttctaaacctaatagttttaataactcatttctaataactgatttagctttgtcatgatgacagtaaataatatttcactagatatttttcaggacacttataaacagcttaaagtgacatttaaaggcttaactaggttaattaggtcaactagggtaaataggcaagttattgtataacgatggtttgttctgtggacttttgaaaaaaatatagcttaaaggggtttaTAATTTTgatcctaaaatgttttttaaaaatgtaaaactgcttttattttagccataataaaacaaataagactttcttcaggaaaaaaaactattatcagacatttggtgaaaatttccttgctctgttaaacatattttaaaatatttaaaaaagaaaaaaaagtcctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagttgaagtcagaattattagcccccttaatttttttcttctttttaaaatattttctaaatgatgtttaacagagcaaggacattttcacagtatttctgataatatttatttctactggagaaaatcttacttgttttatttcggctagaataaaaggcattttttattttttaaacaccattttagggacaaaattataagcccctttaagctttattttttctcgataatctacagaacaaaccactgttatacaataacttgcctaattacccttacctgtctacttaacctaattaatccagttaagcctttaaatgtcattttaagctgtatagtggtgtcttgaaaaaatatctagtcaaatattatttactgtcatcgtggtaaagataaaataaatccattattattaatgagttattaaaaatattatgtttagacttgttgaaaaaaatcttctcttcattaaacagatattggggaaaaataaataagaggtctaataattcaggggggctaataattccgacttcaactgtatgtatatatatatattagtacaaAAACACCTTTTTGCCAGCTGTTTCTATGGGCTGCTAAGCTTAAACTTATGCCATCTTGGAACAGTTTTACCCAATCCATGAAATTATGGAGAGCAAGCTGTCTGTGTCTGCAAACGTAGCTATACACATGTGAAAATCTGTATGACCTGTAGACGTTAGCATATGATTTTGCTGAGCTAACACATTGAAAACATCTGCAGTTTTGACAACCAAGTGCGACTTGTTTTTGTGCCATCTCTGAAAACTCTTTGAATAAAATCATTCTGGAGCTTCTAAA
>TCONS_00042727
ATCGCTGCAAGACACGCCCCCATCCGGGCATATGACACGCACTCCTTCTCCAGCATGGCGGCTTCAGctaaaaagaataagaaaaaggGTAAGACCCTTACCCTGACTGACTTTTTAGCAGAGGACAGTGGTGGAAATGCTCCACCCAGTTATGCGCCCCCGAAGCCCACGAGCTGGGCCGACGAGACCGATGACCTGGAGGGAGATGTTACTACATCCTGGCACACAGAAGATGAGGTGTATCGCGCACCACCTATCGATCGCTCAATTCTGCCGACTGCTCCACGTGCTGCACGCGAGCCCAACGTGGACCGCTCTCGTCTGCCCCGCAGCCCTCCTTACACCGCCTTCCTGGGCAACCTTCCCTACGACGTCACCGAAGACTCCATCAAAAACTTCTTCCGCGGACTCAGTATCAGTGCTGTTCGCCTCCCGAGGGAGCCAAGTAACCCAGAGCGGCTTAAAGGCTTCGGCTATGCAGAGTTTGATGATGTGGAGTCTCTTTTACAAGCGCTCAGCCTCAATGAAGAGAACCTTGGAAATCGTAGAATCCGTGTAGACATCGCTGACCAGTCCAACGAAAAAGAGAGAGACGATCGCTCTGTGTCTGGCAGGGATCGTAACCGCAGTGACCGAGACATGGGCCCAGATAAAACCGATTCAGACTGGAGGGCAAGACCTAAATCTGAAGCCGACGATGGACCACGCAGAGATGATGCATTTGCAGAGCGTTCCAAAGACCGATATGATTCTGACCGTCACCGTGAAGGTCAGCGGTGGGACAATGATCGTTATGATGGAGGAAGAGACAGATACCGGGAACGATATGATGACAGAGAGCGCAGAGACTATGACAGAGGCTTTGATTCACGCAGTGGGGGACGGCGACCCTTTGGAAGCGGCTTTCGGCGTGACTATGACGATCGGCGGGATGATTTTCGGGGCAGTGGAGACAGATATGGTGACCGTGAAGAGAGATTCGAAAGGCGGGATGAGAGGCGTGACGACAGAGGCCCTCCTCAGAGGCCCAAGCTGAACCTGAAGCCTCGGAGTGTTCCTAAAGATGAAGAGCCATCCCGGGGGCCTTCAGCCTCCTCTGGACGGGCTGCGTCCATCTTTGGTGGAGCCAAACCGGTGGACACTGCTGCTAAAGAGAGGGAGGTGGAGGAGAGGCTTAAGAAAGAGCAGGATAGACTGCAGAGACAGCTGGAAGAGGACAAGAACAGAGGACCTGAACGCAAACCCAGAGAGAGACATCCCAGCTGGCGTAGCGAGGACCAAGGAACCGAACGCTCGCGGACAGGAAGCGAGTCATCACAAACGGGAAACCCACCAAGCAGGGGGCAGAGGCGTCGGGAAAGTGAACGTTCTGTAGAAAACGAGGTATTCAGCAGCCGTGATGAGGAGCTATCCTCTCATGGAAGTCAATCTCCTGCCTCAAAACAGGAAGCTTTGCCGCTGAAAGTTGTTCCAGCGCCACCACCGAAAGAGAACGCTTGGGCCAAGAGGAGCGCCATGAGTGCAGGATCCACTGAGAGCGATAGTAAACCCGCCGTTTCTCCCAGCAGCGCCGCTCCACCTAGAAGCTTGCCAGGCTCAGGGGATGTTCCTCAAAGAAATAAAGAAATTCAGCTCAGCCAGTAAATACGCAGCCTTGCTGATGGACGGAGAGCAGGCAGGAGAGGAAGATGGTGGAAATTAAGACGGACTGCAATTTTAATTACCAATTAAACCTACAGCTTTTGTTTCATGCAGCACCGAAGGACCCAGATGAGCCCtttgagagcaaaaaaaaaaaaaacattttagagcaAACCCCTTCCTCTTCAGGACTGAACCGAAAACCTTGTGTGAAAATCCAGGACTTGTTTTAAAGTAAAGAGAGTGGAGGAATGAATGCTTTTGACTAATTAAAATGCAAAGGAAAAGGATCCTGCATACATCATACATTGAGAGTGCATTTTCTCCTTAGCTTGATCGCACGTTGAGCGACCGGAAGATGTAAAATCAGGGGGAAAGTGCCACGAGATGAATGTTTTCCCTGATCTTTAGGGCTTCCTGAGCTTTCTTAAAGGACGTTTACAGTAGATGCTTTTCCGAGATCTTCGGTCAAGTAAAGCGGTCTGTGATCTGCATTGGTTATAAATCTCACAACCTTGGTTTAATGTCTTTAAACTCAAACCCGGTCCCTTGATTTGCATTCAGGGGCTTTCAGATCAGGTCAGAACCTGTTAGTTTCGGTTTGATATTTCTCCGCGTGGCTTTAAGCAGGAGTCTCCCGTTTTTATCTCATTTATCCTTTGAGGACTTTTTAAAGCCACTCCTTTGGACTGATGTGCAATAGGAATTGAAGTATTCCTCTGAATCTCCATGTTTCAACAACAGAGACTGCTGCAGCTTTGGGTTGAACATATATCTAAAGGTAGTGACATGAATTGCTTATTGATATAAACTGTGTACCATCTgaaaaaacaaaccaataaaagaCCATG
>TCONS_00042728
AGAGAGGGAGGTGGAGGAGAGGCTTAAGAAAGAGCAGGATAGACTGCAGAGACAGCTGGAAGAGGACAAGAACAGAGGACCTGAACGCAAACCCAGAGAGAGACATCCCAGCTGGCGTAGCGAGGACCAAGGAACCGAACGCTCGCGGACAGGAAGCGAGTCATCACAAACGGGAAACCCACCAAGCAGGGGGCAGAGGCGTCGGGAAAGTGAACGTTCTGTAGAAAACGAGGTATTCAGCAGCCGTGATGAGGAGCTATCCTCTCATGGAAGTCAATCTCCTGCCTCAAAACAGGAAGCTTTGCCGCTGAAAGTTGTTCCAGCGCCACCACCGAAAGAGAACGCTTGGGCCAAGAGGAGCGCCATGAGTGCAGGATCCACTGAGAGCGATAGTAAACCCGCCGTTTCTCCCAGCAGCGCCGCTCCACCTAGAAGCTTGCCAGGCTCAGGGGATGTTCCTCAAAGAAATAAAGATGAAAACAAAGCAGATGGGGTGCGGCGGGATCGGGGCCCCTCTCGGGGTCGCGGTGGGGCCTCGGGCTCTGGAGCAGGCAGGGGGCGTGGAGACGCAGCCAGCCGAGACCGAAGGAAGGAGACAGACAGAAAGGACGCAAGAAGAGAGCGAGATCTCAGACCAGCACCAGAGCCAAAGAAATTTGAGGAGTCTCCCAGTCCTAAATTCAGCTCAGCCAGTAAATACGCAGCCTTGCTGATGGACGGAGAGCAGGCAGGAGAGGAAGATGGTGGAAATTAAGACGGACTGCAATTTTAATTACCAATTAAACCTACAGCTTTTGTTTCATGCAGCACCGAAGGACCCAGATGAGCCCtttgagagcaaaaaaaaaaaaaacattttagagcaAACCCCTTCCTCTTCAGGACTGAACCGAAAACCTTGTGTGAAAATCCAGGACTTGTTTTAAAGTAAAGAGAGTGGAGGAATGAATGCTTTTGACTAATTAAAATGCAAAGGAAAAGGATCCTGCATACATCATACATTGAGAGTGCATTTTCTCCTTAGCTTGATCGCACGTTGAGCGACCGGAAGATGTAAAATCAGGGGGAAAGTGCCACGAGATGAATGTTTTCCCTGATCT
>TCONS_00042729
CCGCTGAAAGTTGTTCCAGCGCCACCACCGAAAGAGAACGCTTGGGCCAAGAGGAGCGCCATGAGTGCAGGATCCACTGAGAGCGATAGTAAACCCGCCGTTTCTCCCAGCAGCGCCGCTCCACCTAGAAGCTTGCCAGGCTCAGGGGATGTTCCTCAAAGAAATAAAGATGAAAACAAAGCAGATGGGGTGCGGCGGGATCGGGGCCCCTCTCGGGGTCGCGGTGGGGCCTCGGGCTCTGGAGCAGGCAGGGGGCGTGGAGACGCAGCCAGCCGAGACCGAAGGAAGGAGACAGACAGAAATTCAGCTCAGCCAGTAAATACGCAGCCTTGCTGATGGACGGAGAGCAGGCAGGAGAGGAAGATGGTGGAAATTAAGACGGACTGCAATTTTAATTACCAATTAA

Function

symbol description
eif4ba Predicted to enable RNA strand annealing activity; RNA strand-exchange activity; and ribosomal small subunit binding activity. Predicted to be involved in eukaryotic translation initiation factor 4F complex assembly and formation of translation preinitiation complex. Orthologous to human EIF4B (eukaryotic translation initiation factor 4B).

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0097010 eukaryotic translation initiation factor 4F complex assembly biological_process
GO:0043024 ribosomal small subunit binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0034057 RNA strand-exchange activity molecular_function
GO:0033592 RNA strand annealing activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060629-1 Predicted to enable RNA strand annealing activity; RNA strand-exchange activity; and ribosomal small subunit binding activity. Predicted to be involved in eukaryotic translation initiation factor 4F complex assembly and formation of translation preinitiation complex. Orthologous to human EIF4B (eukaryotic translation initiation factor 4B).

Ensembl:

ensembl_id ENSDARG00000017439

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042726 False 6370 mRNA 0.42 15 10396842 10453077
TCONS_00042727 False 2492 mRNA 0.50 13 10396889 10449449
TCONS_00042728 False 1100 mRNA 0.51 7 10426219 10449005
TCONS_00042729 True 406 mRNA 0.57 4 10431776 10448688

Neighbor

gene id symbol gene type direction distance location
XLOC_021500 krt18a.2 coding upstream 41290 10352921 ~ 10355552 (+)
XLOC_021499 krt18a.1 coding upstream 45088 10347851 ~ 10351754 (+)
XLOC_021498 zgc:171775 coding upstream 231809 10146542 ~ 10165033 (+)
XLOC_021497 NA coding upstream 444016 9938245 ~ 9952826 (+)
XLOC_021496 slc16a7 coding upstream 507512 9867483 ~ 9889330 (+)
XLOC_021502 tns2a coding downstream 16878 10469955 ~ 10587257 (+)
XLOC_021503 BX323028.1 coding downstream 148247 10601324 ~ 10606546 (+)
XLOC_021504 ppp4r2a coding downstream 352111 10805188 ~ 10827419 (+)
XLOC_021505 NA coding downstream 771047 11224124 ~ 11224605 (+)
XLOC_021506 chl1a coding downstream 832585 11285662 ~ 11452312 (+)
XLOC_021495 NA non-coding upstream 530904 9865701 ~ 9865938 (+)
XLOC_021494 CU466281.1 non-coding upstream 669410 9727410 ~ 9727432 (+)
XLOC_021493 CR388392.1 non-coding upstream 778507 9618213 ~ 9618335 (+)
XLOC_021490 NA non-coding upstream 993225 9396668 ~ 9403617 (+)
XLOC_021508 CR735125.1 non-coding downstream 1482507 11935584 ~ 11935700 (+)
XLOC_021510 AL929345.3 non-coding downstream 1630480 12083557 ~ 12083671 (+)
XLOC_021514 NA non-coding downstream 1806459 12259536 ~ 12279048 (+)

Expression


Co-expression Network