XLOC_021504 (ppp4r2a)


Basic Information

Item Value
gene id XLOC_021504
gene name ppp4r2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 10805188 ~ 10827419 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042732
GGTCAGGCAGGTAGTGACGTCACCGGCGCCATATTAAAGATTTGCTGCTGTTTTCTCCGTGTCGCTGTTGCCATCTTTCTGTTTCCAACTGGACTCAGAGAGACTAGAGAGTAGTAAACATACCTCCACAATGGAAATCGACACGCTTCTGGGAGCATTTCGAGATTTCGAGAAGAAAGGAGAAAAGGAAAGCTGCCCAATTTTGGATCAGTTTCTATCGCATGTTGCAAAAACAGGAGAGACCATGATTCAGTGGTCTCAGTTTAAAAGCTACTTCCTCTTCAAACTTGAAAAAGTGATGGATGATTTTAAAGCCTCATGTCCAGAGCAACGGGGACCTGCAAATCCAAATGTTGAGTACATTCCCTTTGAAGAGATGAAGCAGAGGATTCTCAAAATCGTCAATGGGTACAACGGGATTCCTTTCACTATTCAACGGCTATGTGAGCTGCttactgagccaaaaagaaactaCGCAGGAACAGACAAGTTCCTCAGGGGTGTGGAGAAGaatgTAATGGTGGTCAGTTGTGTGTATCCTACCTCAGAGAAAAAAGGGTCAAGTTGTGTGAACCGAATGAATGGTGTCATGTTTCCTGGCAACACTTCAGCTTTTCCAGATAGAAATGTGAATGGTCCGGGAACACCAAGGCCACTGAATAGACCAAAACACTCCTTATCCAGCAATGTAGCTACAAACGGCCTTCCTGACAGCACAGAAAGCAAAGAACAAGCATCTGAGCAATCAGAGAGGACGGTCAAcgAGTCTTCGGCATCAGAAGCACAaggtcacagtggtgcagtgaaGAGTAAACATCGTGACGACGAAGATGCTACACATGCAGAGACACATGAAGCAAAGAGGCTTAAGTTTGacaaggaggaagaggaggaggaggatgatgagGAAGAAGATGAAGATGGGGATGAAATAAAGAAAGAGCTTGATGAACCGCACTCACCCTGCACATCAGTAGCTGAGAGCTCATCAGACGTACCGCAGTCTTCAACAGACGTCACTGCTGAGGTGAAGGATGAAGACCAAGAGCCCTCTAGTACACAGTCAGAGGTCGTAGAAAATGGGGTTGACAGATCTACTTCAGAAGATTCACCCGACCCTTCCCACAACAAGGCAACCGGCAGTGAATCGGACCCTAAAGAGCAGCaagcggaggaggaggaggaggaagaggagagcgCAGAGGCTCAGGAAACAGAGGAGACAAATGACCCAGTCAGCAGTAGCAGCAATAACAGCAGTGACGAGGGAGTGTCCAGTGCAGAGACTCCATCCGCATCTCCCAGCAGTTCCACAGAGCTGCCAGCAGAGGGCAGTGTCACCGCAGAAATCACTTCAGACAGCTCAGAGACTGCAGACGACAACATGGAGCAAGACTGAAGTGTGGCCACACGCTGTTGATTTTTACACTCTACTGTACAAACCCCCCCACAAATCACTTATCCTGCAAATTTAGCAGATCCTTTATAGACCAGGAGAAGAGGGCATTTTGGTGACGCCCCTAAAGAGCTCTCGAGACACATCTCCTCCTTTTGAGCCTCCTTTGGGCTTTCTGTTAATATGGGTTCTTCTCTGAAGAACCACTTGAAAAACTGGAAGCTCACTTTTCTGATGGCTTAGCAGAGCGTTTGCCATTGAATAACACAAGTCCTTGTGTCCATGGCGGTTTTCTGTAATCCTACTCTAATCATGGGTGTCCATCAAAATCATGTCTCTCGCCTGCTTTTCTAGGCGTGAAAACGTGGCACATCTTTGGTTTGTGTGAACATACGTTTGAAGGGTAAGGGGCGTATGTGCACTTCCTTTTAGTTTTGTCCAGTCAACAAATGATCTCAGGATTCCCGTTGAATGGCAGACCGGTGTCTAAACATTCCAGGAGAACACCCACTTTTGCCCTTATTGCCTTCTGCATTCATCTGGTGGATTGTAGCACAAAGTGCTCAATAGCAAAATTTAGACCGATTTCCTTTCTTTGCTAAttgtttctcttttatttttagCTCCTTTGATTTTAACTGCCTTCCCAGCATAGCACCGAAATGTATTAATCCACTGATGCTGGTAAATAGATTCTAAAATGGACTAATGTGATTTTCCATGCACTAGATACTTGAGTGCTGTTGGTTGCAATGTGTAACTTAATATAGTGAGCCTGTTTTTTCAACCGACATAATGTGCTTAACCACTATTGAGCCATTCTTATTTGTTATGagctttttcattttctttcataaAACGACGGCAAACAGTTGTATACAATTGAAATGAACAACACTGTCAACAGCAACATCTCTTAAACTGTACTTTTCATGCTTCCTACAGACATGTGTAGAGGCTGTCCCACCCATACCTATTTCCACAGCTCCTTTTTGATATGTAgaatttttaaattagatttttgtagATTATTATAAGTGTTCACTGCTTTTGTGAAAAAGTGAAATTGTATGATCTCCATGTGAACTGAATGCTTGGGCTTTCAACAGTATTTCTGAAGAGCAATAAATGTTCACATTAAAAGCGGTGATATGATTAATCTGTGGCAACTGGAGACAGTTCTAATCATTCGTCTCATTTAAGGTCATGGACACAGTTCGTTTGCATCACAAAATTTGCTAGTGAAGCCTAAAACTGATGGACATCACATATAATGCTGTTCACAACAGACGCggaatgcatgaataaattgtgCAATTCATGTGTAAATggacgtgaacattttgagtttactcacttcattcacgTGTCAAGTGGGCAGGAgctggtataagtttctgataaccttggataaaaatatcacgattaCACGGCATCCCAGTAttgtctaaaatatattctttttaaatgtctgggtaaaaaataacacattttcccccctttgaaaacaatatattctatcttttgaaagatttaaaacatttgagcagtaaacatgtcaggctaaataatgaaaatgaa
>TCONS_00042733
GGTCAGTTGTGTGTATCCTACCTCAGAGTGAGTGAACCTTTCTTTGTTGTATTTTCCGGTTTATTGAGTGGGATTTCAATATCAGCTTTCGTCCAACCATTCTGATTTCCTTAATTCTACCATTCATCATTTTTTACAGGAAAAAAGGGTCAAGTTGTGTGAACCGAATGAATGGTGTCATGTTTCCTGGCAACACTTCAGCTTTTCCAGATAGAAATGTGAATGGTCCGGGAACACCAAGGCCACTGAATAGACCAAAACACTCCTTATCCAGCAATGTAGCTACAAACGGCCTTCCTGACAGCACAGAAAGCAAAGAA

Function

symbol description
ppp4r2a Predicted to enable protein phosphatase regulator activity. Predicted to be involved in protein dephosphorylation. Predicted to be part of protein phosphatase 4 complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PPP4R2 (protein phosphatase 4 regulatory subunit 2).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0030289 protein phosphatase 4 complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019888 protein phosphatase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4922 Predicted to enable protein phosphatase regulator activity. Predicted to be involved in protein dephosphorylation. Predicted to be part of protein phosphatase 4 complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PPP4R2 (protein phosphatase 4 regulatory subunit 2).

Ensembl:

ensembl_id ENSDARG00000026540

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042732 False 2977 mRNA 0.43 9 10805188 10827419
TCONS_00042733 True 320 lncRNA 0.42 2 10814030 10814497

Neighbor

gene id symbol gene type direction distance location
XLOC_021503 BX323028.1 coding upstream 198642 10601324 ~ 10606546 (+)
XLOC_021502 tns2a coding upstream 217931 10469955 ~ 10587257 (+)
XLOC_021501 eif4ba coding upstream 352111 10396842 ~ 10453077 (+)
XLOC_021500 krt18a.2 coding upstream 449636 10352921 ~ 10355552 (+)
XLOC_021499 krt18a.1 coding upstream 453434 10347851 ~ 10351754 (+)
XLOC_021505 NA coding downstream 396705 11224124 ~ 11224605 (+)
XLOC_021506 chl1a coding downstream 458243 11285662 ~ 11452312 (+)
XLOC_021507 cntn3a.1 coding downstream 841690 11669109 ~ 11861393 (+)
XLOC_021508 CR735125.1 coding downstream 1108165 11935584 ~ 11935700 (+)
XLOC_021509 edn3b coding downstream 1245561 12072980 ~ 12106839 (+)
XLOC_021497 NA non-coding upstream 852362 9938245 ~ 9952826 (+)
XLOC_021495 NA non-coding upstream 939250 9865701 ~ 9865938 (+)
XLOC_021494 CU466281.1 non-coding upstream 1077756 9727410 ~ 9727432 (+)
XLOC_021493 CR388392.1 non-coding upstream 1186853 9618213 ~ 9618335 (+)
XLOC_021510 AL929345.3 non-coding downstream 1256138 12083557 ~ 12083671 (+)
XLOC_021514 NA non-coding downstream 1432117 12259536 ~ 12279048 (+)
XLOC_021518 NA non-coding downstream 1845984 12673403 ~ 12830266 (+)

Expression


Co-expression Network