G211057


Basic Information

Item Value
gene id G211057
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99844992 ~ 99849321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU239240
tttttaccccactgtatgtgttgtcagacAACAATGTAAAGTACTGAAAACCACAGAGATCGAACTGTTATATTGTCTTTGAGCTCAACCATCATCCGTGTATGTTTTGGATGGAATTGAATAGTGTTTTTTTCAGACGCTCAAAGAGCTTTATAATGTAAagagggaaactaacctcatctacctgttaaaggggaaactaacctcatctaccagTTAAAggggaaactaacctcatctacctgttaaaggggaaactaacctcatctacctgttaaaggggaaactaacctcatctaccagTTAAAggggaaactaacctcatctacctgttaaagatggaaactaacctcatctaccagTTAAAggggaaactaacctcatctaccagTTAAAGatggaaactaacctcatctaccagTTAAAggggaaactaacctcatctaccagTTAAagagggaaactaacctcatctaccagTTAAAGatggaaactaacctcatctaccagTTAAagagggaaactaacctcatctacctgttaaagagggaaactaacctcatctacctgttaaagatggaaactaacctcatctacctgttaaagagggaaactaacctcatctaccagTTAAagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacccgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaagtggaaactaacctcatctacctgttaaaggggaaactaacctcatctacctgttaaagagggaaactaacctcatctaccagTTAAAGatggaaactaacctcatctaccagTTAAAggggaaactaacctcatctacctgttaaagagggaaactaacctcatctacctgttaaagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacccGTTAGAGGGAAACTAACCTAATCTACCTGTTagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaagagggaaactaacctcatctacctgttaaagatggaaactaacctcatctaccagTTAAAggggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaagagggaaactaacctcatctacctgttaAAGATGGAAACTAACCTCATATACCAGTTAAagagggaaactaacctcatctacctgttaaagagggaaactaacctcatctacctgttaaagatggaaactaacctcatctaccagTTAAAggggaaactaacctcatctacctgttaaaggggaaactaacctcatctacctgttaaagatggaaactaacctcatctacctgttaaagatggaaactaacctcatctacctgttaaagagggaaactaacctcatctaccagTTAAagagggaaactaacctcatctacctgttaaagagggaaactaacctcatctacctgttaaagagggaaactaacctcatctaccagTTAAAggggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaaggggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaagagggaaactaacctcatctacctgttaaaggggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaagatggaaactaacctcatctacctgttaaagatggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaagatggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaaggggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacccgttagagggaaactaacctcatctaccaATTAAAGatggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaagatggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagaggggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctaccagTTAAAGatggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctaccagTTAAAGatggaaactaacctcatctacctgttaaagatggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttagagggaaactaacctcatctacctgttaaagatggaaactaacctcatctacctgttaaagagggaaactaacctcatctacctgttaaagatggaaactaacctcatctaccagTTAAAGatggaaactaacctcatctaccagTTAAAGatggaaactaacctcatctaccagTTAAAGatggaaactaacctcatctacctgttaaaggggaaactaacctcatctacctgtta

Function

NR:

description
PREDICTED: basic salivary proline-rich protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239240 True 3237 lncRNA 0.39 2 99844992 99849321

Neighbor

gene id symbol gene type direction distance location
LOC110502581 LOC106561777 coding upstream 26198 99777695 ~ 99818794 (+)
LOC110502564 LOC106584732 coding upstream 166493 99636736 ~ 99678499 (+)
duox2 LOC106561732 coding upstream 247384 99581865 ~ 99597608 (+)
LOC110500866 cep152 coding upstream 634052 99207967 ~ 99210940 (+)
LOC110502545 cep152 coding upstream 637832 99188901 ~ 99207160 (+)
LOC118943910 NA coding downstream 34833 99884154 ~ 99891769 (+)
LOC110500919 LOC106584740 coding downstream 47901 99896619 ~ 99899881 (+)
LOC110500932 LOC106561787 coding downstream 56319 99905640 ~ 99951756 (+)
LOC110502593 myo5c coding downstream 103942 99953263 ~ 100008473 (+)
LOC110500941 LOC106561786 coding downstream 162432 100011753 ~ 100027473 (+)
G210982 NA non-coding upstream 185514 99656774 ~ 99659478 (+)
G210976 NA non-coding upstream 201707 99643050 ~ 99643285 (+)
G210973 NA non-coding upstream 211542 99633161 ~ 99633450 (+)
G210972 NA non-coding upstream 212780 99631226 ~ 99632212 (+)
G210969 NA non-coding upstream 224338 99620197 ~ 99620654 (+)
G211054 NA non-coding downstream 28403 99877724 ~ 99878161 (+)
G211071 NA non-coding downstream 32478 99881799 ~ 99882331 (+)
G211077 NA non-coding downstream 54778 99904099 ~ 99904439 (+)
G211087 NA non-coding downstream 122754 99972075 ~ 99973929 (+)
G210983 LOC106561766 other upstream 123009 99720179 ~ 99721983 (+)
G210823 LOC106561768 other upstream 606734 99237378 ~ 99238258 (+)
G210484 NA other upstream 918586 98902788 ~ 98926406 (+)
LOC110510476 LOC106561728 other upstream 945454 98897524 ~ 98944948 (+)
G211779 NA other downstream 610336 100459657 ~ 100461981 (+)
G211809 LOC107574289 other downstream 618357 100467678 ~ 100468157 (+)
G212656 NA other downstream 1633090 101482181 ~ 101486796 (+)
G212674 NA other downstream 1660439 101509760 ~ 101516104 (+)

Expression


Co-expression Network