G211532


Basic Information

Item Value
gene id G211532
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100160238 ~ 100160764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU239863
TCAAACTGATGTTGTCTGTTTCATGATTAAAGTAGAATCAATGGTAAGACTCCGGGATAACATAAGGAAGGGTATAAAACATAGACCTCATTATACAGTAAGGCTGAATAGCTAAATTAGAACACAGACAGCCAAGCCATACATAATTTAGGATCACTAAGCACAGCATAGCCCAGGCATAATTTAGGATCATTAAGCACAGCATAGCCCAGGCATAATTTAGGATCATTAAGCACAGCATATCCCAGGCATAATTTAGGATCACTAAGCACAGCATAGCCCAGGCATAATTTAGGATCATTAAGCACAGCATAGCCCAGGCATAATTTAGGATCATTAAGCACAGCACAGCCCAGGCATAATTTAGCTAAGGATCACTTTTCATCTCTCCCCTgagctctcctctcttttccccatctgTCCTCTCTTACTGAGGAATGTAGCGATGTTTTCCTTAGAAGTATTTCCAAATAACACCATTACAAGTTAGGAAGAA
>TU239864
TCAAACTGATGTTGTCTGTTTCATGATTAAAGTAGAATCAATGGTAAGACTCCGGGATAACATAAGGAAGGGTATAAAACATAGACCTCATTATACAGTAAGGCTGAATAGCTAAATTAGAACACAGACAGCCAAGCCATACATAATTTAGGATCACTAAGCACAGCATAGCCCAGGCATAATTTAGGATCATTAAGCACAGCATAGCCCAGGCATAATTTAGGATCATTAAGCACAGCATAGCCCAGGCATAATTTAGGATCATTAAGCACAGCATAGCCCAGGCATAATTTAGGATCATTAAGCACAGCACAGCCCAGGCATAATTTAGCTAAGGATCACTTTTCATCTCTCCCCTgagctctcctctcttttccccatctgTCCTCTCTTACTGAGGAATGTAGCGATGTTTTCCTTAGAAGTATTTCCAAATAACACCATTACAAGTTAGGAAGAA

Function

NR:

description
PREDICTED: proline-rich extensin-like protein EPR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239863 False 496 lncRNA 0.40 2 100160238 100160764
TU239864 True 460 lncRNA 0.39 2 100160238 100160764

Neighbor

gene id symbol gene type direction distance location
LOC110500984 LOC106584750 coding upstream 19662 100133134 ~ 100140576 (+)
LOC110502598 LOC106584747 coding upstream 81828 100051852 ~ 100078410 (+)
LOC110500952 LOC106561785 coding upstream 110717 100038199 ~ 100049521 (+)
LOC110500941 LOC106561786 coding upstream 132765 100011753 ~ 100027473 (+)
LOC110502593 myo5c coding upstream 151765 99953263 ~ 100008473 (+)
slc5a12 slc5a12 coding downstream 16428 100177192 ~ 100209223 (+)
LOC110501220 NA coding downstream 181786 100342550 ~ 100351946 (+)
LOC118936889 NA coding downstream 256310 100417074 ~ 100419174 (+)
LOC110501156 LOC106567469 coding downstream 277722 100438486 ~ 100444236 (+)
sigirr sigirr coding downstream 477810 100638574 ~ 100655606 (+)
G211533 NA non-coding upstream 751 100155685 ~ 100159487 (+)
G211524 NA non-coding upstream 28975 100130315 ~ 100131263 (+)
G211519 NA non-coding upstream 33968 100114858 ~ 100126270 (+)
G211513 NA non-coding upstream 56005 100103089 ~ 100104233 (+)
G211508 NA non-coding upstream 68692 100090868 ~ 100091546 (+)
G211541 NA non-coding downstream 11500 100172264 ~ 100172631 (+)
G211546 NA non-coding downstream 21338 100182102 ~ 100220348 (+)
G211551 NA non-coding downstream 32559 100193323 ~ 100195665 (+)
G211545 NA non-coding downstream 49185 100209949 ~ 100211816 (+)
LOC110500919 LOC106584740 other upstream 260361 99896619 ~ 99899881 (+)
LOC110502581 LOC106561777 other upstream 345863 99777695 ~ 99818794 (+)
G210983 LOC106561766 other upstream 438255 99720179 ~ 99721983 (+)
G210823 LOC106561768 other upstream 921980 99237378 ~ 99238258 (+)
G210484 NA other upstream 1233832 98902788 ~ 98926406 (+)
G211779 NA other downstream 298893 100459657 ~ 100461981 (+)
G211809 LOC107574289 other downstream 306914 100467678 ~ 100468157 (+)
G212656 NA other downstream 1321647 101482181 ~ 101486796 (+)
G212674 NA other downstream 1348996 101509760 ~ 101516104 (+)
G212690 NA other downstream 1393621 101554385 ~ 101561158 (+)

Expression


Co-expression Network