G212028


Basic Information

Item Value
gene id G212028
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100863139 ~ 100864212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU240564
cttgaatgagtaggtgcgcccaaacttttgactggtactttatgtcTTGGGACATAGGCATCATGTATAGACTAACAGACTTGTGTATCCATCTCCCTGACCTGAATCATATCTGGACTGGGCTCGAGGAATGACAGCCTCTGTCCCTGATCATACATAACTCACCCGTCTCTAACGCCAGAAACAATATTTATTTTGACGTCTTACAATTTGAATACAGACCTGGGGCCGTATCTAGtgtgtgctgatctaggatcggtTTCGTCTTTTAAAATGACAACAAGAATATCATTACATGGACTGTAGGTTTAGGGTCAATTCCAATTTTTAATTCCAGTAAATTCagatttcaattcaattcaatgcttTTCAGTTAGGAACATTTGGAAATGGGGTTTACATTCTGAATGGATTAGAATAGAAATAGAATTGACCCTAGATCAGCCCCTCCTACTCTGACAGGCTTTGTGAGTACGGCCTCTTGGAACAAAAAAGGGCAATGTGTCACAGATGGAAATAAAATACATTACGAAGGCAGTTAGACCGGTCATACTGAACTTACACGTGCCTTACTTTGGCCAACAACAAAGCAATCATAGCAGGGTTTGGCTATTTTgctcagacagacacacccacataCTTTACAACCTTCAGAATGTCCTCCTCCCAGATTTTCCCCTGAGGCTCATTCCCCATAGACTGGGTGATCATTGATTCATACCCTATCATGTTACTCTCACGCCCCACAGTGAGCCGGGTGTCCTCTGCCATAGAGATAAAACAATAGACATTGAGCTTCAAATCAGCGGCACTAGCGGTCAGCGATCTTACCCAGGTACAGTCCTGATAAGTTAGTTCAAACATGTTAGTTTCAAACTATAGGGTAGCTTGTTCTATCTCCATGTCCTCTGTAGACTCCTTTTCACCTGTCCTCACAGCACACAATGCCATAGAGTGGCCAGCGCCACAGCCAATCACAAGAGGCCGGAGGGCAGGAATGGGCTGTGGTTCGCTGACATCTGTCTCGGAACCGTCCCCACACATCCCATGTTCGTTCCACCCCCAAGAGAGCAG
>TU240565
CCCTAGATCAGCCCCTCCTACTCTGACAGGCTTTGTGAGTACGGCCTCTTGGAACAAAAAAGGGCAATGTGTCACAGATGGAAATAAAATACATTACGAAGGCAGTTAGACCGGTCATACTGAACTTACACGTGCCTTACTTTGGCCAACAACAAAGCAATCATAGCAGGGTTTGGCTATTTTgctcagacagacacacccacataCTTTACAACCTTCAGAATGTCCTCCTCCCAGATTTTCCCCTGAGGCTCATTCCCCATAGACTGGGTGATCATTGATTCATACCCTATCATGTTACTCTCACGCCCCACAGTGAGCCGGGTGTCCTCTGCCATAGAGATAAAACAATAGACATTGAGCTTCAAATCAGCGGCACTAGCGGTCAGCGATCTTACCCAGGTACAGTCCTGATAAGTTAGTTCAAACATGTTAGTTTCAAACTATAGGGTAGCTTGTTCTATCTCCATGTCCTCTGTAGACTCCTTTTCACCTGTCCTCACAGCACACAATGCCATAGAGTGGCCAGCGCCACAGCCAATCACAAGAGGCCGGAGGGCAGGAATGGGCTGTGGTTCGCTGACATCTGTCTCGGAACCGTCCCCACACATCCCATGTTCGTTCCACCCCCAAGAGAGCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240564 False 1074 lncRNA 0.43 1 100863139 100864212
TU240565 True 641 lncRNA 0.49 1 100863572 100864212

Neighbor

gene id symbol gene type direction distance location
LOC118936893 NA coding upstream 3877 100848174 ~ 100860603 (+)
LOC110502612 LOC106584763 coding upstream 14798 100785531 ~ 100848341 (+)
sigirr sigirr coding upstream 207533 100638574 ~ 100655606 (+)
LOC110501156 LOC106567469 coding upstream 418903 100438486 ~ 100444236 (+)
LOC118936889 NA coding upstream 443965 100417074 ~ 100419174 (+)
LOC110501031 LOC106592222 coding downstream 65156 100929368 ~ 100964786 (+)
best1 LOC102229874 coding downstream 481073 101345285 ~ 101371174 (+)
LOC110516669 LOC106590745 coding downstream 770418 101634630 ~ 101695484 (+)
LOC110502669 LOC107698134 coding downstream 1173826 102038038 ~ 102167821 (+)
LOC110501421 LOC106561865 coding downstream 1320147 102184359 ~ 102238260 (+)
G212029 NA non-coding upstream 633 100862168 ~ 100862506 (+)
G212027 NA non-coding upstream 1105 100860657 ~ 100862034 (+)
G212065 NA non-coding upstream 31097 100831620 ~ 100832042 (+)
G212031 NA non-coding upstream 77795 100784953 ~ 100785344 (+)
G212106 NA non-coding downstream 58318 100922530 ~ 100991554 (+)
G212092 LOC106591208 non-coding downstream 101264 100965476 ~ 100967289 (+)
G212121 NA non-coding downstream 106446 100970658 ~ 100970982 (+)
G212122 NA non-coding downstream 110015 100974227 ~ 100974671 (+)
G212129 NA non-coding downstream 134011 100998223 ~ 100998855 (+)
G211809 LOC107574289 other upstream 394982 100467678 ~ 100468157 (+)
G211779 NA other upstream 401158 100459657 ~ 100461981 (+)
LOC110500919 LOC106584740 other upstream 963262 99896619 ~ 99899881 (+)
LOC110502581 LOC106561777 other upstream 1048764 99777695 ~ 99818794 (+)
G210983 LOC106561766 other upstream 1141156 99720179 ~ 99721983 (+)
G212656 NA other downstream 618199 101482181 ~ 101486796 (+)
G212674 NA other downstream 645548 101509760 ~ 101516104 (+)
G212690 NA other downstream 690173 101554385 ~ 101561158 (+)
G212863 NA other downstream 878687 101742899 ~ 101745974 (+)
G213051 NA other downstream 1313197 102177409 ~ 102177918 (+)

Expression


Co-expression Network