Fish Transcriptome and Expression Database

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model fish

XLOC_021527 (dre-mir-1388)

Basic Information

Item	Value
gene id	XLOC_021527
gene name	dre-mir-1388
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007134.7
NCBI id	CM002907.2
chromosome length	46223584
location	13604218 ~ 13604320 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042770
TGATGGATGAGCAGTGCTTTCCAGGACTGTCCAACCTGAGAATGCTTGAGTTTTGGTCAATCTCAGGTTCGTCAGCCCATGAAAAACTGTCTCGCTCAAAGCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000082246

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00042770	True	103	miRNA	0.49	1	13604218	13604320

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_021526	uckl1b	coding	upstream	4214	13528053 ~ 13600004 (+)
XLOC_021524	ZNF512B	coding	upstream	87366	13375359 ~ 13516852 (+)
XLOC_021525	CR749171.1	coding	upstream	161496	13442608 ~ 13442722 (+)
XLOC_021523	samd10b	coding	upstream	271355	13124085 ~ 13332863 (+)
XLOC_021522	si:dkey-150i13.2	coding	upstream	669347	12916059 ~ 12934871 (+)
XLOC_021528	NA	coding	downstream	20593	13624913 ~ 13625531 (+)
XLOC_021529	NA	coding	downstream	51715	13656035 ~ 13656319 (+)
XLOC_021530	zbtb46	coding	downstream	117506	13721826 ~ 13806495 (+)
XLOC_021531	lmod3	coding	downstream	210658	13814978 ~ 13822642 (+)
XLOC_021532	NA	coding	downstream	240237	13844557 ~ 13850492 (+)
XLOC_021518	NA	non-coding	upstream	773952	12673403 ~ 12830266 (+)
XLOC_021520	NA	non-coding	upstream	903804	12698971 ~ 12700414 (+)
XLOC_021519	NA	non-coding	upstream	928797	12674927 ~ 12675421 (+)
XLOC_021514	NA	non-coding	upstream	1325170	12259536 ~ 12279048 (+)
XLOC_021533	NA	non-coding	downstream	324019	13928339 ~ 13941278 (+)
XLOC_021536	NA	non-coding	downstream	629405	14233725 ~ 14235007 (+)

Expression

Co-expression Network

Homologous

species	gene id	symbol	gene type	chromosome	NCBI id	location
grasscarp (Ctenopharyngodon idella)	G116655	NA	non-coding	CI01000021	null	1162210 ~ 1162669 (-)
bowfin (Amia calva)	G28456	NA	non-coding	CM030123.1	CM030123.1	42301277 ~ 42302097 (-)