G212559


Basic Information

Item Value
gene id G212559
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101414314 ~ 101416539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU241268
TGCTCATACCAAATGTATATTTTATTGCAGCTTTAAGTATATCAGTATAAAAGGCATTTGATCCATCTctacaaacatacagtacatttactgAGATGTGAATGACAAATCAAGTCACACTAAATACATGGTTAAAGCACAATAGATGAAATCCTTCTTATACACAGAAAATAATTTCCAGTGCATGAATAAACCAGGAATAACAATGAGCCCCAAATGGCAGTCTATTGTGCGTTACTTTGGGCTATGGGCCTTGCGATAGGCTAGCGTCCTTTCCAGGGGGTGGagttgtacatcaagctgcctcacgggGGTGGagttgtacatcaagctgcctcacgctacagaaacaggagacaggctCCTGCCCTATGGGACATTCTGGTTCAGACAAGGCTActttataaagggaataggatgccatttgggactcgcATAAGGACATATAGGTTCAgggccttcaggaagtattcacaccccttgacctttcccacattttgttgtgttacaccctggatttaaaatgaaataaattgagattttgtgtcactgatcaaCACACAATCCtccgtaatgtcaaagtggaattatgttaccagggaggttttccaatggttcgcaaagaagggcacctattggcagatgggtaaaaaaaagaagaagcagacactgaatatccctttgagcatggtgaagttattaattacactttggatggtgtatcaatatggCAGTAATATGGCCCAGTCactacaggcgtccttcctaactcagttgccggagaggaaggaaaccgttcagggatttcaccatgaggccaatggtgccttttaacagttacagagtttaatgactgatgggagaaaactgaggatggatcaacaactttgtagtgactccacaatactaatctaaatgacatggaaaagaaggaaacctgtacagaataaacattttccaaaacatgcatgctGTTGGCAAACAAGGCAATAAAGCagtactgcaaaaaaaaaaatgtggcacagaaattatgtttggggcaaatccaacacaacactgagtaccactcttcatattttcaagcatggtggtggctgcatcatgttatgggtatgcttgtcatcggcaaggactagggagtttttcaggataaaaagaaacgtaATAGAGCTAAGCCCCCGGCAAAATCGTAGataaacttggttcagtctgcaaatatacactggagttgcttaccaagagcaCATTGAATGTTACTGAGTGGCctcgttacagttttgacttacttcaacatctatggcaagacttgaaaatggcagtctagcaatgattaacaactAAATTGACAACGCATGAAGAATTTTTGGAAGAATAATggaaaaatattgtacaatccagacgTGCAAAGCTTTACcaatttacccagaaagactcactgctttaattgctgccaaaggtgattgtaACGTGTTGACTCAGgatgttgaatacttatctagTCAAGATACATTAGTGTTTAATTTTCCATACATTTATTTGAGTATTTTGTATAGATcgtttacaacaacaaaaaaggcaattcaatccattttaattccactttgtaacacaacaaaatgtggtaaaagtcaaggggtgtgaatactttctgaaggtaatgtactgtataattagaaggtactgtatatagaaggtactgtatatagaaggtactgtactgtagatagaaggcactgtactgtagatagaaggcactgtagatagaaggcactgtagatagaaggcactgtagatagaaggcactgtagatagaaggcactgtagatagaaGGTACTGTAGATAGAAGGCGATGGGGTTTGACAGGGATGGTCCTCACATGGGCCAGCAGGATAAGGCACCATCCACTTTACAGATCATTCCAGACTCCCGTGGGAAAGTCACTGGTTTTCCTgaggaaacaaac
>TU241269
TGCTCATACCAAATGTATATTTTATTGCAGCTTTAAGTATATCAGTATAAAAGGCATTTGATCCATCTctacaaacatacagtacatttactgAGATGTGAATGACAAATCAAGTCACACTAAATACATGGTTAAAGCACAATAGATGAAATCCTTCTTATACACAGAAAATAATTTCCAGTGCATGAATAAACCAGGAATAACAATGAGCCCCAAATGGCAGTCTATTGTGCGTTACTTTGGGCTATGGGCCTTGCGATAGGCTAGCGTCCTTTCCAGGGGGTGGagttgtacatcaagctgcctcacgggGGTGGagttgtacatcaagctgcctcacgctacagaaacaggagacaggctCCTGCCCTATGGGACATTCTGGTTCAGACAAGGCTActttataaagggaataggatgccatttgggactcgcATAAGGACATATAGGTTCAgggccttcaggaagtattcacaccccttgacctttcccacattttgttgtgttacaccctggatttaaaatgaaataaattgagattttgtgtcactgatcaaCACACAATCCtccgtaatgtcaaagtggaattatgttaccagggaggttttccaatggttcgcaaagaagggcacctattggcagatgggtaaaaaaaagaagaagcagacactgaatatccctttgagcatggtgaagttattaattacactttggatggtgtatcaatatggCAGTAATATGGCCCAGTCactacaggcgtccttcctaactcagttgccggagaggaaggaaaccgttcagggatttcaccatgaggccaatggtgccttttaacagttacagagtttaatgactgatgggagaaaactgaggatggatcaacaactttgtagtgactccacaatactaatctaaatgacatggaaaagaaggaaacctgtacagaataaacattttccaaaacatgcatgctGTTGGCAAACAAGGCAATAAAGCagtactgcaaaaaaaaaaatgtggcacagaaattatgtttggggcaaatccaacacaacactgagtaccactcttcatattttcaagcatggtggtggctgcatcatgttatgggtatgcttgtcatcggcaaggactagggagtttttcaggataaaaagaaacgtaATAGAGCTAAGCCCCCGGCAAAATCGTAGataaacttggttcagtctgcaaatatacactggagttgcttaccaagagcaCATTGAATGTTACTGAGTGGCctcgttacagttttgacttacttcaacatctatggcaagacttgaaaatggcagtctagcaatgattaacaactAAATTGACAACGCATGAAGAATTTTTGGAAGAATAATggaaaaatattgtacaatccagacgTGCAAAGCTTTACcaatttacccagaaagactcactgctttaattgctgccaaaggtgattgtaACGTGTTGACTCAGgatgttgaatacttatctagTCAAGATACATTAGTGTTTAATTTTCCATACATTTATTTGAGTATTTTGTATAGATcgtttacaacaacaaaaaaggcaattcaatccattttaattccactttgtaacacaacaaaatgtggtaaaagtcaaggggtgtgaatactttctgaaggtaatgtactgtataattagaaggtactgtatatagaaggtactgtactgtagatagaagGCACTGTGGATagaagGTACTGTAGAtagaaggcactgtagatagaaggtactgtactgtagatagaagGTAAGGTACTGTATATAGAAGGTAAGGTACTGTAGATAGAAGGTACAGTAGATagaagatactgtagatagaaggcactgtagatagaaggcactgtactgtagatagaaggcactgtagatagaaggcactgtagatagaaggcactgtagatagaaggcactgtagatagaaggcactgtagatagaaGGTACTGTAGATAGAAGGCGATGGGGTTTGACAGGGATGGTCCTCACATGGGCCAGCAGGATAAGGCACCATCCACTTTACAGATCATTCCAGACTCCCGTGGGAAAGTCACTGGTTTTCCTgaggaaacaaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241268 False 1964 lncRNA 0.40 3 101414314 101416539
TU241269 True 2107 lncRNA 0.40 3 101414314 101416539

Neighbor

gene id symbol gene type direction distance location
best1 LOC102229874 coding upstream 43140 101345285 ~ 101371174 (+)
LOC110501031 LOC106592222 coding upstream 449528 100929368 ~ 100964786 (+)
LOC118936893 NA coding upstream 555052 100848174 ~ 100860603 (+)
LOC110502612 LOC106584763 coding upstream 565973 100785531 ~ 100848341 (+)
sigirr sigirr coding upstream 758708 100638574 ~ 100655606 (+)
LOC110516669 LOC106590745 coding downstream 218091 101634630 ~ 101695484 (+)
LOC110502669 LOC107698134 coding downstream 621499 102038038 ~ 102167821 (+)
LOC110501421 LOC106561865 coding downstream 767820 102184359 ~ 102238260 (+)
LOC110501429 LOC106561864 coding downstream 845578 102262117 ~ 102278883 (+)
LOC110501451 LOC106561861 coding downstream 890958 102307497 ~ 102314434 (+)
G212498 NA non-coding upstream 26358 101386552 ~ 101387956 (+)
G212550 NA non-coding upstream 30652 101383308 ~ 101383662 (+)
G212549 NA non-coding upstream 32312 101381088 ~ 101382002 (+)
G212496 frih non-coding upstream 33987 101374153 ~ 101380327 (+)
G212526 NA non-coding upstream 70191 101343000 ~ 101344123 (+)
G212561 NA non-coding downstream 1615 101418154 ~ 101418595 (+)
G212629 NA non-coding downstream 38129 101454668 ~ 101455336 (+)
G212630 NA non-coding downstream 38560 101455099 ~ 101455955 (+)
G212637 NA non-coding downstream 42304 101458843 ~ 101461354 (+)
G212642 NA non-coding downstream 48319 101464858 ~ 101466549 (+)
G211809 LOC107574289 other upstream 946157 100467678 ~ 100468157 (+)
G211779 NA other upstream 952333 100459657 ~ 100461981 (+)
LOC110500919 LOC106584740 other upstream 1514437 99896619 ~ 99899881 (+)
LOC110502581 LOC106561777 other upstream 1599939 99777695 ~ 99818794 (+)
G210983 LOC106561766 other upstream 1692331 99720179 ~ 99721983 (+)
G212656 NA other downstream 65872 101482181 ~ 101486796 (+)
G212674 NA other downstream 93221 101509760 ~ 101516104 (+)
G212690 NA other downstream 137846 101554385 ~ 101561158 (+)
G212863 NA other downstream 326360 101742899 ~ 101745974 (+)
G213051 NA other downstream 760870 102177409 ~ 102177918 (+)

Expression


Co-expression Network