G212699 (pnpla2)


Basic Information

Item Value
gene id G212699
gene name pnpla2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101578661 ~ 101579068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU241491
tgtgtgtgtgtacctgtggctCAGGGGGAAACAGAGTTCTGGACACtctgtagaggtgtgtgtgtgtgtctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctgtggctCAGGGGGAAACAGAGCTCTGGACACtctgtagagGTTGGTGAGTGTAAACTGGATGGAGGTGTTGGTGAATCGTAGTTCATGCATGTTGGTGGATCGGTCTCTAGGGCAGATGTCACTCTCTCCAGAGAACGGAGACACAGTGATGGTATTCTTCAGTTCATACTGAGGCAGATTATCACTGATACCACCGTCCACGTAAC

Function

symbol description
pnpla2 Predicted to enable triglyceride lipase activity. Predicted to act upstream of or within lipid catabolic process and positive regulation of triglyceride catabolic process. Is expressed in liver and male organism. Orthologous to human PNPLA2 (patatin like phospholipase domain containing 2).

NR:

description
PREDICTED: patatin-like phospholipase domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241491 True 312 lncRNA 0.50 2 101578661 101579068

Neighbor

gene id symbol gene type direction distance location
best1 LOC102229874 coding upstream 207487 101345285 ~ 101371174 (+)
LOC110501031 LOC106592222 coding upstream 613875 100929368 ~ 100964786 (+)
LOC118936893 NA coding upstream 719399 100848174 ~ 100860603 (+)
LOC110502612 LOC106584763 coding upstream 730320 100785531 ~ 100848341 (+)
sigirr sigirr coding upstream 923055 100638574 ~ 100655606 (+)
LOC110516669 LOC106590745 coding downstream 55562 101634630 ~ 101695484 (+)
LOC110502669 LOC107698134 coding downstream 458970 102038038 ~ 102167821 (+)
LOC110501421 LOC106561865 coding downstream 605291 102184359 ~ 102238260 (+)
LOC110501429 LOC106561864 coding downstream 683049 102262117 ~ 102278883 (+)
LOC110501451 LOC106561861 coding downstream 728429 102307497 ~ 102314434 (+)
G212693 NA non-coding upstream 12252 101565170 ~ 101566409 (+)
G212690 NA non-coding upstream 17503 101554385 ~ 101561158 (+)
G212659 NA non-coding upstream 85627 101491762 ~ 101493034 (+)
G212660 NA non-coding upstream 86030 101491887 ~ 101492631 (+)
G212656 NA non-coding upstream 91865 101482181 ~ 101486796 (+)
G212705 NA non-coding downstream 6112 101585180 ~ 101589863 (+)
G212710 NA non-coding downstream 19649 101598717 ~ 101599399 (+)
G212711 NA non-coding downstream 27708 101606776 ~ 101607584 (+)
G212714 NA non-coding downstream 32380 101611448 ~ 101611851 (+)
G212715 NA non-coding downstream 32812 101611880 ~ 101612945 (+)
G212674 NA other upstream 62557 101509760 ~ 101516104 (+)
G211809 LOC107574289 other upstream 1110504 100467678 ~ 100468157 (+)
G211779 NA other upstream 1116680 100459657 ~ 100461981 (+)
G212863 NA other downstream 163831 101742899 ~ 101745974 (+)
G213051 NA other downstream 598341 102177409 ~ 102177918 (+)
G213055 NA other downstream 659235 102238303 ~ 102239540 (+)
G213185 NA other downstream 935139 102514207 ~ 102516302 (+)
G213221 NA other downstream 1016463 102595531 ~ 102599866 (+)

Expression


Co-expression Network