XLOC_021531 (lmod3)



Basic Information


Item Value
gene id XLOC_021531
gene name lmod3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 13814978 ~ 13822642 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00042772
ACTTGTTCCATAAATACCATCCCCTCAGTTGAATGGAGGTTATTTTAGATCGTACATGTGGCGTAAGGCCTTGAGTCCTCCTGCTTGTCTGGAACTAAGTGACACCACACTTTAGAGGCAGTGGCTGTAACTGAGTTCTTGAAAACACAGAAGTGGACATGTCTGAGCGCACTGAACAGGAATCATACACAGACAAAATCGATGAGGATGAGATTCTGGCAGGCCTCTCGGCGGAGGAGCTCAAACAGCTCCAAAGTGAGATGGACGACATCGCTCCTGACGAGAGAGTGCCGGTGGGATTGAGACAGAAAGACGCTTCTCATGAGATGACAGTCCGAGATTGCACTGAGCCTGAATCAGAAGAGGAGATAGATGAGGATGAAATTCTGGCAGGCCTCTCAGCAGAGGAGCTCAAGCAGCTCCAGAGCGAGATGGAAGAAATTGCTCCTGACGAGAGAGTGCCGGTGGGAATGAGACAGAGAGACCAAACTGACAAACCACCCACTGGATCATTTGATCACAGATCGCTGGTGGAATATCTGTACTGGGAGAAAGAGTCCAAACGCATGCTGGAGGAAGAGAGGGTTCCCACAACTCTATTACCCAGTCAGaaaacaaatgaggaGCATGAAGCAAAAAATGAAGACAAAGTTGAAGAGCTGGAACTTGTCTATGAGGAGATTGTGGAGGAGGTTGAAGGGGGACAGGGAGATGCTGTTGTTGATGAAGTGATTGAAGAAGTGATAATGGAAGTTGAGGAAGAGGACAAAGTATGTGACAAGCCTGTCAAAACAGATCTTGATGCTACCGACCCCACAGTGACCTCAGAAGATGGTTTACAGCGCCCTTCAGAGTCTGCAGATGCAAATGTTGAAGCTAAGACTGACCAATCAGGACTTGACACAGAAACTAAAGTAAATGAGGAGAAGAAAGAAGATTCCACTGAACCTGCTCCCTCATCATATGAAAATTGGGTTCCAGAGAAAGAAGAAAGGGTCATATCCAAGCTAAAGATCCCAAAACTTGCTCTAGGTGGCAACACTTTTGTTAAAAAGACTGCAAGGCCTTCTGGGAATGAAACTAATTTGGAGTCCACTCTGGATAAAATTCGCAACAACAATCCCTCTGTCACAGACGTCAATCTAAACAATATTGAAAACATTCCAAAAGAAATGCTCCTTGATTACGTCAACTCCCTGAAGAAGAACCGACATGTTAAGACCTTTAGCATTGCAAACACTGGCGCAGATGAAAATGTAGCATTCACTCTTGCTAACATGCTTAAAGAGAACAGGAGTATCACCACACTAAATATCGAATCCAATTTCATCACAGGAAAAGGAATTGTGGCAATAATACGTTGCCTGCAGTTCAACGAGACATTAACTGAGCTTCGCTTCCACAATCAAAGGCACATGCTAGGACACCATGCAGAAATGGAGGTATCTCGTCTCCTTAAGGCTAACAACACTCTTCTGAAGATGGGTTACCATTTTGAACTCCCTGGGCCCAGAATGGTGGTCACCAATCTCCTCACTAGGAACTTGGATCGTCAACGGCAACAGAGAATGGAGGAGCAGAAGCTCCAGCAAATGAAAGAGCAGAGGAAGGTCATGGAGATGTACGAAGACTCTCTAAACTTGCCCCCTGGCATGTTGGAAATGTTGGGAGGCTACATACCATTGTCCCTCTTGCAGAATTGTCAAAATGGGGCTGAGGATATCCCTGAAGATTCTCCTGAACCTTCACCACAACCAAGTCCACCTCACCAGCTGTGCAAAACCCAACATCTTGCCCCACAACAGCATCCTCCAAATTTAAGTACAGGAAACCTCTTCGAAGAAGTACAGCTGAAAAAGACTCCAAAACGAAGAGATCCACTTCTGGAATGGAACCAATGTGATGAGAGGAAAGATGGAAGACCCAATGTTCATCTAAGGAGCGTTCCTAAAAAAAGGAGCATAGCAAGAGAAGGACCTGTGGATGAAAGAGCAAACCTAAAAGACATGATTAAGACGTTAAAGCCAGTTCCGCGTAGGCGAGAGCCACCAAAGGTGGACTTAACACCCCGGGATCACCTGCTCAGTGAGATTCGACAGAGCAATGTGGCCTATCTCAAAGCAGTACCTCTTCCTAAAATCCTGGAGTCACAGGAAACTAGTCTCTTTTGAGACACACACATAACTTCAAATAGATTGCACAGTGGGACAGGGCCAACGTCAGACAGACCATGGAGAGAATGCGGCTCATGTGGCCAAAC

Function


symbol description
lmod3 Predicted to enable tropomyosin binding activity. Acts upstream of or within muscle contraction and skeletal muscle thin filament assembly. Predicted to be located in M band. Predicted to be active in striated muscle thin filament. Human ortholog(s) of this gene implicated in nemaline myopathy 10. Orthologous to human LMOD3 (leiomodin 3).

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0051694 pointed-end actin filament capping biological_process
GO:0006936 muscle contraction biological_process
GO:0007015 actin filament organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0031430 M band cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005523 tropomyosin binding molecular_function
GO:0003785 actin monomer binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-353 Predicted to enable tropomyosin binding activity. Acts upstream of or within muscle contraction and skeletal muscle thin filament assembly. Predicted to be located in M band. Predicted to be active in striated muscle thin filament. Human ortholog(s) of this gene implicated in nemaline myopathy 10. Orthologous to human LMOD3 (leiomodin 3).

Ensembl:

ensembl_id ENSDARG00000062662

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00042772 True 2260 mRNA 0.46 4 13814978 13822642
Loading

Neighbor


gene id symbol gene type direction distance location
XLOC_021530 zbtb46 coding upstream 8483 13721826 ~ 13806495 (+)
XLOC_021529 NA coding upstream 158659 13656035 ~ 13656319 (+)
XLOC_021528 NA coding upstream 189447 13624913 ~ 13625531 (+)
XLOC_021527 dre-mir-1388 coding upstream 210658 13604218 ~ 13604320 (+)
XLOC_021526 uckl1b coding upstream 214974 13528053 ~ 13600004 (+)
XLOC_021532 NA coding downstream 21915 13844557 ~ 13850492 (+)
XLOC_021533 NA coding downstream 105697 13928339 ~ 13941278 (+)
XLOC_021534 cacnb3a coding downstream 274866 14097508 ~ 14180307 (+)
XLOC_021535 birc7 coding downstream 394866 14217508 ~ 14230506 (+)
XLOC_021536 NA coding downstream 411083 14233725 ~ 14235007 (+)
XLOC_021525 CR749171.1 non-coding upstream 372256 13442608 ~ 13442722 (+)
XLOC_021520 NA non-coding upstream 1114564 12698971 ~ 12700414 (+)
XLOC_021539 CR388373.1 non-coding downstream 645361 14468003 ~ 14470571 (+)
XLOC_021542 CR759764.1 non-coding downstream 1530491 15353133 ~ 15353249 (+)

Expression


Expression of XLOC_021531(lmod3) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Expression of XLOC_021531(lmod3) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_01288735_01291953 LMOD3 coding CI01000021 null 1288596 ~ 1291962 (+)