Item | Value |
---|---|
gene id | XLOC_021531 |
gene name | lmod3 |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007134.7 |
NCBI id | CM002907.2 |
chromosome length | 46223584 |
location | 13814978 ~ 13822642 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
lmod3 | Predicted to enable tropomyosin binding activity. Acts upstream of or within muscle contraction and skeletal muscle thin filament assembly. Predicted to be located in M band. Predicted to be active in striated muscle thin filament. Human ortholog(s) of this gene implicated in nemaline myopathy 10. Orthologous to human LMOD3 (leiomodin 3). |
id | name | namespace |
---|---|---|
GO:0048741 | skeletal muscle fiber development | biological_process |
GO:0051694 | pointed-end actin filament capping | biological_process |
GO:0006936 | muscle contraction | biological_process |
GO:0007015 | actin filament organization | biological_process |
GO:0030239 | myofibril assembly | biological_process |
GO:0030240 | skeletal muscle thin filament assembly | biological_process |
GO:0005856 | cytoskeleton | cellular_component |
GO:0005865 | striated muscle thin filament | cellular_component |
GO:0030016 | myofibril | cellular_component |
GO:0031430 | M band | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0005523 | tropomyosin binding | molecular_function |
GO:0003785 | actin monomer binding | molecular_function |
id | description |
---|---|
ZDB-GENE-090313-353 | Predicted to enable tropomyosin binding activity. Acts upstream of or within muscle contraction and skeletal muscle thin filament assembly. Predicted to be located in M band. Predicted to be active in striated muscle thin filament. Human ortholog(s) of this gene implicated in nemaline myopathy 10. Orthologous to human LMOD3 (leiomodin 3). |
ensembl_id | ENSDARG00000062662 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00042772 | True | 2260 | mRNA | 0.46 | 4 | 13814978 | 13822642 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_021530 | zbtb46 | coding | upstream | 8483 | 13721826 ~ 13806495 (+) |
XLOC_021529 | NA | coding | upstream | 158659 | 13656035 ~ 13656319 (+) |
XLOC_021528 | NA | coding | upstream | 189447 | 13624913 ~ 13625531 (+) |
XLOC_021527 | dre-mir-1388 | coding | upstream | 210658 | 13604218 ~ 13604320 (+) |
XLOC_021526 | uckl1b | coding | upstream | 214974 | 13528053 ~ 13600004 (+) |
XLOC_021532 | NA | coding | downstream | 21915 | 13844557 ~ 13850492 (+) |
XLOC_021533 | NA | coding | downstream | 105697 | 13928339 ~ 13941278 (+) |
XLOC_021534 | cacnb3a | coding | downstream | 274866 | 14097508 ~ 14180307 (+) |
XLOC_021535 | birc7 | coding | downstream | 394866 | 14217508 ~ 14230506 (+) |
XLOC_021536 | NA | coding | downstream | 411083 | 14233725 ~ 14235007 (+) |
XLOC_021525 | CR749171.1 | non-coding | upstream | 372256 | 13442608 ~ 13442722 (+) |
XLOC_021520 | NA | non-coding | upstream | 1114564 | 12698971 ~ 12700414 (+) |
XLOC_021539 | CR388373.1 | non-coding | downstream | 645361 | 14468003 ~ 14470571 (+) |
XLOC_021542 | CR759764.1 | non-coding | downstream | 1530491 | 15353133 ~ 15353249 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000021_01288735_01291953 | LMOD3 | coding | CI01000021 | null | 1288596 ~ 1291962 (+) |