XLOC_021532


Basic Information

Item Value
gene id XLOC_021532
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 13844557 ~ 13850492 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044794
atttaaagtaatgttttctatttatttttaaatacaatgaaaataaacTAGCTATAGCGACTTTAATTTCAtttagtttggtatatttaccttcggcccagaGCACTCAacgatatttggtttttggcccttcatacgaaaacGTTTGGGCACCCCAGGTCAAACACATGCACAACCTGCATGTATTCTGTCAGTGCTGCATGATCTTGGTTCGTTGCACCACCTGCTGGTTTATCAGCATTAAAAGTACATAACAAGCCTCGACATATcagtacagttaaaaaaaaagttatacaatAAAGTGCCCATGTGTATACAAATACAATATGAACTGAAAGCATTGGAGAAATTTGGACACACCTGTGGCACCTTAACTATGCTTTATTGTAAAAGTGTCtattataatacaatagaaaacaCTAGTATACACTAGGCAGAACTTTTACACAAAATTATGTTTAAGCATAAAAAAAATACGAACATAAAGCAGTCAAGACTGTCAAAGCAACATCGCCGTCACTCAATACATATAACATTAAAGGGATAGGTCACCCAAAAATCACTTATTTACTCAGCCTTTGCTTAAGTTTTTTCAactgaacacaaaggaaaacaGCTATTCacttccattgttttttctagagatgttaatggctgttttttccaacattcttcaaaatattttgttttggattcaacagaagaaagacattcATAAGTTTAAAACCACTTTACTGTGAGAAAATCGTCATTTTTagctaaactatccctttaagttgttttttttatgacGCTTTATCCAATGTCAAAAATGATAGCAAGCAGAAATACACCATCCCCGAGTTTAGCTCACAGTTTGATAGTGATGTAACAATGTACATCAGAGCTCATCAGGACTATTTTTACAGAAGGATGCGTCATGTTATGCATATGCTTTGTAAGACTAAACATCATTGTGACTCACTTGGACAACTATTGATCCCATTGTTTCTGGAATTTCTTATTTTGTGTGTAGTTTTGTACAGCTTATCTATACATTTCAACAATACATGAACGCAAGGATCACTACAGTACTAGACTGTACTTTAAACCACCACCTGCCCATAAAACACTTCTGAAACATAAGCAGCATTTAATGTTAAGACTTTAGCGTGAGAAAAAAAGGAATGAAACAGATTTGTGTTTCTTAAAGACAGTAGAATGTGAACACAAGGAATGACAGTGCATTAACATCTGAATAGTTCTTAAAGAgaaggttcacccaaaaatatactTACAATTTACACACCCGCAGGTGCTTCCAAACTGTTAGGAGATTCTTTCtgctgttaaatacaaaagaagatgttttgaagaaagttgtAGTCTTCCATACAAATCAATAGAAGTttaatggttacagctttccaactttcttcaaaatatcttctttagtgttcaacagaagaaagatactCGCAGGattgaaacaagtaaaagatgACAGAGTTTTCACTTTCGGGTGAACAGCCCCTTTAACTGCACcagcaaaaataataatgtacaataaaatataaaatgaaataataataagatattttaaagcattgtttctcaaccacgttgccggaggaccaccaacactgcatgttttggatgtctcctttgtctgtcacaaccgttacaggtctttcagtctctgctaatgagctgatcatcttaatcaggtgtgtttagttaaaacgacatggaaaatgtgcagagctggtggtcctccaggaacttggTTAACAAACACTGTTCTAAATCATATACCACAAGGAGCTGGTTATGATTCATAACAtgctaaaaaaaaaggttttccaaTCACGTTGGTCTTTCTGTAAATGCAGTGCTTAAACAGAACGAATTTtcaatatttagtttgtttaaagtgCTCGTTTCAGGCACTCGACTgctgattttttgtttttaaacaggcTTCAGCTTCCGCATCTGCTGCTTTCACAGTTTGTGTGGATTCACCCATTTGTATGTTCCCTCGTAGCGGAAGCCCACTTTCTGCACCAGCTCATCAGCCTCAGCGGGACCACGACTTTAACACAGACAGAGAGAATGTGAGATACATTACACATCGTTTCCTGGAAAAAGTCTGTCGATGGTGAGCTGGTTTATATTACCTCCCGTATTTGTATTTGATGGGTGGTGTTTTCTCAGACTCTATCTGATGAAGGAGAGGAGTGAAGATCCTCCAGGCTTCCCTCAACTCATCACTGTGACAGTAGAAGACAGATTGCGTTTACATTAAGCCACTTTTCCAccgcacacgacatttggacacgactgtcggaatacgctcTTTTGTGGCAGTCACACAGAACTTTTAGTTTTgttg
>TCONS_00044795
TGCATGATCTTGGTTCGTTGCACCACCTGCTGGTTTATCAGCATTAAAAGTACATAACAAGCCTCGACATATcagtacagttaaaaaaaaagttatacaatAAAGTGCCCATGTGTATACAAATACAATATGAACTGAAAGCATTGGAGAAATTTGGACACACCTGTGGCACCTTAACTATGCTTTATTGTAAAAGTGTCtattataatacaatagaaaacaCTAGTATACACTAGGCAGAACTTTTACACAAAATTATGTTTAAGCATAAAAAAAATACGAACATAAAGCAGTCAAGACTGTCAAAGCAACATCGCCGTCACTCAATACATATAACATTAAAGGGATAGGTCACCCAAAAATCACTTATTTACTCAGCCTTTGCTTAAGTTTTTTCAactgaacacaaaggaaaacaGCTATTCacttccattgttttttctagagatgttaatggctgttttttccaacattcttcaaaatattttgttttggattcaacagaagaaagacattcATAAGTTTAAAACCACTTTACTGTGAGAAAATCGTCATTTTTagctaaactatccctttaagttgttttttttatgacGCTTTATCCAATGTCAAAAATGATAGCAAGCAGAAATACACCATCCCCGAGTTTAGCTCACAGTTTGATAGTGATGTAACAATGTACATCAGAGCTCATCAGGACTATTTTTACAGAAGGATGCGTCATGTTATGCATATGCTTTGTAAGACATACATAATTGTGACTCAGACAACTATTGATCCCAAATTGTTTCTGGAATTTCTCCTCGTTTGTGGTCCAATTAAAcagcttatttatatatttcaacaAAATACATGAACGCAAAAGTCACTGCAGTAGCAGACTGTACTTTAAACCACCACCTGCCCATAAAACATTTCTGAAACATAAGCAGCATTTAAGATTAAGACTTTTGCTTGAGAAAAAGGAATGAAACAGATTTGTGTTTCTTAAAGACAGTAGAATGTGGACAAAGGGAATGACTGTGCATTAATATCAGAAtactatttaaagggatagttcacccaaaaatgaaaatatactagTTATTTACTTActctcaagtgcttccaaaccttaagaagattctttcttctgttaaacacaaaagatggtATTTTGTAGAAAGCTGTAGTCTTTCATACAAGtgaatggaagttaatggttacagctttccaaCATTTCTTAAgatttcttattttgtgtttaaaacctcataaagTGATAGCAAGCAGAAATACATCATCCTCAAGTTTGGCTCATATTTTGATAATGGTGTAACAATGAACATCAGAGCTCAGCTGGACTATTTTTACAGGAGGCTGTGGCACGTAATGCATCTGCTTTGTAAGACTAAACATCATTGTGACTCACTTGGACAACTATTGATCCCATTGTTTCTGGAATTTCTTATTTTGTGTGTAGTTTTGTACAGCTTATCTATACATTTCAACAATACATGAACGCAAGGATCACTACAGTACTAGACTGTACTTTAAACCACCACCTGCCCATAAAACACTTCTGAAACATAAGCAGCATTTAATGTTAAGACTTTAGCGTGAGAAAAAAAGGAATGAAACAGATTTGTGTTTCTTAAAGACAGTAGAATGTGAACACAAGGAATGACAGTGCATTAACATCTGAATAGTTCTTAAAGAgaaggttcacccaaaaatatactTACAATTTACACACCCGCAGGTGCTTCCAAACTGTTAGGAGATTCTTTCtgctgttaaatacaaaagaagatgttttgaagaaagttgtAGTCTTCCATACAAATCAATAGAAGTttaatggttacagctttccaactttcttcaaaatatcttctttagtgttcaacagaagaaagatactCGCAGGattgaaacaagtaaaagatgACAGAGTTTTCACTTTCGGGTGAACAGCCCCTTTAACTGCACcagcaaaaataataatgtacaataaaatataaaatgaaataataataagatattttaaagcattgtttctcaaccacgttgccggaggaccaccaacactgcatgttttggatgtctcctttgtctgtcacaaccgttacaggtctttcagtctctgctaatgagctgatcatcttaatcaggtgtgtttagttaaaacgacatggaaaatgtgcagagctggtggtcctccaggaacttggTTAACAAACACTGTTCTAAATCATATACCACAAGGAGCTGGTTATGATTCATAACAtgctaaaaaaaaaggttttccaaTCACGTTGGTCTTTCTGTAAATGCAGTGCTTAAACAGAACGAATTTtcaatatttagtttgtttaaagtgCTCGTTTCAGGCACTCGACTgctgattttttgtttttaaacaggcTTCAGCTTCCGCATCTGCTGCTTTCACAGTTTGTGTGGATTCACCCATTTGTATGTTCCCTCGTAGCGGAAGCCCACTTTCTGCACCAGCTCATCAGCCTCAGCGGGACCACGACTTTAACACAGACAGAGAGAATGTGAGATACATTACACATCGTTTCCTGGAAAAAGTCTGTCGATGCAGCAAGCTAATGGTTAGAGGGGCATGGCTAGGCATATTTCACCCAacctgtcaaactgacatcacaGAAGGACTGCCATTCCAAAGCAAAAGCAAATGGTCAGGTCCAGCTCGGTCTCCTCAGGGCTAAAATAGACTCCAGGTTTCTTGCTCATCATCTTGGCGTAAATGGCCTCATTGGGCTGCACACGGACCACCAGCTCATTTCTCCGGCACTGAGAGCTAAAGATGTCTCCAGGAACATCAGTGAACTGCAGACGCACCTCCGCTTTCCTCTCATTCAGAGCCTTTCCACACCGGAGAATAAACGGGACGCC

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0048856 anatomical structure development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044794 False 2374 lncRNA 0.37 2 13844557 13847704
TCONS_00044795 True 2904 lncRNA 0.37 4 13844754 13850492

Neighbor

gene id symbol gene type direction distance location
XLOC_021531 lmod3 coding upstream 21915 13814978 ~ 13822642 (+)
XLOC_021530 zbtb46 coding upstream 38062 13721826 ~ 13806495 (+)
XLOC_021529 NA coding upstream 188238 13656035 ~ 13656319 (+)
XLOC_021528 NA coding upstream 219026 13624913 ~ 13625531 (+)
XLOC_021527 dre-mir-1388 coding upstream 240237 13604218 ~ 13604320 (+)
XLOC_021533 NA coding downstream 77847 13928339 ~ 13941278 (+)
XLOC_021534 cacnb3a coding downstream 247016 14097508 ~ 14180307 (+)
XLOC_021535 birc7 coding downstream 367016 14217508 ~ 14230506 (+)
XLOC_021536 NA coding downstream 383233 14233725 ~ 14235007 (+)
XLOC_021537 CR354537.1 coding downstream 418819 14269311 ~ 14270315 (+)
XLOC_021525 CR749171.1 non-coding upstream 401835 13442608 ~ 13442722 (+)
XLOC_021520 NA non-coding upstream 1144143 12698971 ~ 12700414 (+)
XLOC_021539 CR388373.1 non-coding downstream 617511 14468003 ~ 14470571 (+)
XLOC_021542 CR759764.1 non-coding downstream 1502641 15353133 ~ 15353249 (+)
XLOC_021543 NA non-coding downstream 1627692 15478184 ~ 15478737 (+)

Expression


Co-expression Network