XLOC_021535 (birc7)


Basic Information

Item Value
gene id XLOC_021535
gene name birc7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14217508 ~ 14230506 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042776
ACTGGCCGTAATAATAGGCTCTATGGCGGGCGGAGGGGGGGCTTCGGCACACCTGAACAGCCCGCTATGGAAGGTGAGCAGGATGAGCGCAGATCGCGGACACGAGCGCCAGAGGAGCGCGCGCATGGAGGCGGAGGTTCGGCTCGGGATGCGCAGTGAGGAGGAGAGGCTCCAGACCTTCCACAACTGGCCCAGCGACGCTGCAGTGAGTCCAGAGGAGCTCGCACGGGCTGGCTTTCACTATCTGGGCTACGGGGATACGGTGCAGTGCTTCTGTTGTGAGGGCATCCTGAGGCACTGGGTGGATGGAGACACGCCGCGAGGGGAGCACGAGAGGCACTTCCCCACCTGTGGATTGATGAGAGGCAGGGATGTGGGCAATGTCCCGCGGGGCTCCTCTGATTCTGTGGACGGTCAGCTGCTGAGTCAGCTTCAGCGCTTGACCATGGACGAGCAGGGCCTGACCGGACAGGCTGCATACTCGGAGATGGAGACGGAGGACAACAGGCGATCTACCTTCCACAACTGGCCCACAGGAGCAGCAGTGCAGCCCGACACACTGGCACGCGCTGGATTCTTCTACACAGGTCATGGTGACAACGTGAAGTGTTTCTTCTGTGATGGTGGTTTGAGGAACTGGGAACCAGGAGACGATCCCTGGCAGGAGCATGCCAAATGGTTTCCACAATGTGAGTATTTGCTGCAATCCAGAGGACAGGAATACGTGCGTAACGTCCAGCAGTCTTTCTTCAACATGAATGGGAGAGGGggTGGATCTCTATCATCAGCTGCAGGAAACATTACACCAGTGCGCTCAGACCTGAGTCCAGAGGAGCAGCTAAGGCAGCTTCAGGAGGAGAGGACCTGTAAGGTCTGCATGGACAAACTGGTGTCCATGGTCTTCATCCCCTGCGGTCATCTGGTGGTCTGCAGCGACTGTGCCGCCAGTCTGCGTCACTGCCCCATATGCAGAGCGGTCATCCGGGGCAGCGTGAGAGCATTCATGTCCTGAAgagcaaaaacacacactcacaaacgcCATTAAAAGATTAGTTCACTTCTA

Function

symbol description
birc7 Predicted to enable cysteine-type endopeptidase inhibitor activity involved in apoptotic process and ubiquitin protein ligase activity. Predicted to be involved in negative regulation of apoptotic process; positive regulation of protein ubiquitination; and regulation of cell cycle. Predicted to be active in cytoplasm and nucleus. Orthologous to human BIRC7 (baculoviral IAP repeat containing 7).

GO:

id name namespace
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:1990001 inhibition of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process molecular_function
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070615-35 Predicted to enable cysteine-type endopeptidase inhibitor activity involved in apoptotic process and ubiquitin protein ligase activity. Predicted to be involved in negative regulation of apoptotic process; positive regulation of protein ubiquitination; and regulation of cell cycle. Predicted to be active in cytoplasm and nucleus. Orthologous to human BIRC7 (baculoviral IAP repeat containing 7).

Ensembl:

ensembl_id ENSDARG00000058082

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042776 True 1063 mRNA 0.58 5 14217508 14230506

Neighbor

gene id symbol gene type direction distance location
XLOC_021534 cacnb3a coding upstream 37201 14097508 ~ 14180307 (+)
XLOC_021533 NA coding upstream 276230 13928339 ~ 13941278 (+)
XLOC_021532 NA coding upstream 367016 13844557 ~ 13850492 (+)
XLOC_021531 lmod3 coding upstream 394866 13814978 ~ 13822642 (+)
XLOC_021530 zbtb46 coding upstream 411013 13721826 ~ 13806495 (+)
XLOC_021536 NA coding downstream 3219 14233725 ~ 14235007 (+)
XLOC_021537 CR354537.1 coding downstream 38805 14269311 ~ 14270315 (+)
XLOC_021538 CR388373.3 coding downstream 201817 14432323 ~ 14541590 (+)
XLOC_021539 CR388373.1 coding downstream 237497 14468003 ~ 14470571 (+)
XLOC_021540 si:rp71-79p20.2 coding downstream 359977 14590483 ~ 14731892 (+)
XLOC_021529 NA non-coding upstream 561189 13656035 ~ 13656319 (+)
XLOC_021528 NA non-coding upstream 591977 13624913 ~ 13625531 (+)
XLOC_021527 dre-mir-1388 non-coding upstream 613188 13604218 ~ 13604320 (+)
XLOC_021542 CR759764.1 non-coding downstream 1122627 15353133 ~ 15353249 (+)
XLOC_021543 NA non-coding downstream 1247678 15478184 ~ 15478737 (+)
XLOC_021544 NA non-coding downstream 1248239 15478745 ~ 15483879 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_01506852_01513139 BIRC7 coding CI01000021 null 1506216 ~ 1513306 (+)