XLOC_021535 (birc7)



Basic Information


Item Value
gene id XLOC_021535
gene name birc7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14217508 ~ 14230506 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00042776
ACTGGCCGTAATAATAGGCTCTATGGCGGGCGGAGGGGGGGCTTCGGCACACCTGAACAGCCCGCTATGGAAGGTGAGCAGGATGAGCGCAGATCGCGGACACGAGCGCCAGAGGAGCGCGCGCATGGAGGCGGAGGTTCGGCTCGGGATGCGCAGTGAGGAGGAGAGGCTCCAGACCTTCCACAACTGGCCCAGCGACGCTGCAGTGAGTCCAGAGGAGCTCGCACGGGCTGGCTTTCACTATCTGGGCTACGGGGATACGGTGCAGTGCTTCTGTTGTGAGGGCATCCTGAGGCACTGGGTGGATGGAGACACGCCGCGAGGGGAGCACGAGAGGCACTTCCCCACCTGTGGATTGATGAGAGGCAGGGATGTGGGCAATGTCCCGCGGGGCTCCTCTGATTCTGTGGACGGTCAGCTGCTGAGTCAGCTTCAGCGCTTGACCATGGACGAGCAGGGCCTGACCGGACAGGCTGCATACTCGGAGATGGAGACGGAGGACAACAGGCGATCTACCTTCCACAACTGGCCCACAGGAGCAGCAGTGCAGCCCGACACACTGGCACGCGCTGGATTCTTCTACACAGGTCATGGTGACAACGTGAAGTGTTTCTTCTGTGATGGTGGTTTGAGGAACTGGGAACCAGGAGACGATCCCTGGCAGGAGCATGCCAAATGGTTTCCACAATGTGAGTATTTGCTGCAATCCAGAGGACAGGAATACGTGCGTAACGTCCAGCAGTCTTTCTTCAACATGAATGGGAGAGGGggTGGATCTCTATCATCAGCTGCAGGAAACATTACACCAGTGCGCTCAGACCTGAGTCCAGAGGAGCAGCTAAGGCAGCTTCAGGAGGAGAGGACCTGTAAGGTCTGCATGGACAAACTGGTGTCCATGGTCTTCATCCCCTGCGGTCATCTGGTGGTCTGCAGCGACTGTGCCGCCAGTCTGCGTCACTGCCCCATATGCAGAGCGGTCATCCGGGGCAGCGTGAGAGCATTCATGTCCTGAAgagcaaaaacacacactcacaaacgcCATTAAAAGATTAGTTCACTTCTA

Function


symbol description
birc7 Predicted to enable cysteine-type endopeptidase inhibitor activity involved in apoptotic process and ubiquitin protein ligase activity. Predicted to be involved in negative regulation of apoptotic process; positive regulation of protein ubiquitination; and regulation of cell cycle. Predicted to be active in cytoplasm and nucleus. Orthologous to human BIRC7 (baculoviral IAP repeat containing 7).

GO:

id name namespace
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:1990001 inhibition of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process molecular_function
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070615-35 Predicted to enable cysteine-type endopeptidase inhibitor activity involved in apoptotic process and ubiquitin protein ligase activity. Predicted to be involved in negative regulation of apoptotic process; positive regulation of protein ubiquitination; and regulation of cell cycle. Predicted to be active in cytoplasm and nucleus. Orthologous to human BIRC7 (baculoviral IAP repeat containing 7).

Ensembl:

ensembl_id ENSDARG00000058082

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00042776 True 1063 mRNA 0.58 5 14217508 14230506
Loading

Neighbor


gene id symbol gene type direction distance location
XLOC_021534 cacnb3a coding upstream 37201 14097508 ~ 14180307 (+)
XLOC_021533 NA coding upstream 276230 13928339 ~ 13941278 (+)
XLOC_021532 NA coding upstream 367016 13844557 ~ 13850492 (+)
XLOC_021531 lmod3 coding upstream 394866 13814978 ~ 13822642 (+)
XLOC_021530 zbtb46 coding upstream 411013 13721826 ~ 13806495 (+)
XLOC_021536 NA coding downstream 3219 14233725 ~ 14235007 (+)
XLOC_021537 CR354537.1 coding downstream 38805 14269311 ~ 14270315 (+)
XLOC_021538 CR388373.3 coding downstream 201817 14432323 ~ 14541590 (+)
XLOC_021539 CR388373.1 coding downstream 237497 14468003 ~ 14470571 (+)
XLOC_021540 si:rp71-79p20.2 coding downstream 359977 14590483 ~ 14731892 (+)
XLOC_021529 NA non-coding upstream 561189 13656035 ~ 13656319 (+)
XLOC_021528 NA non-coding upstream 591977 13624913 ~ 13625531 (+)
XLOC_021527 dre-mir-1388 non-coding upstream 613188 13604218 ~ 13604320 (+)
XLOC_021542 CR759764.1 non-coding downstream 1122627 15353133 ~ 15353249 (+)
XLOC_021543 NA non-coding downstream 1247678 15478184 ~ 15478737 (+)
XLOC_021544 NA non-coding downstream 1248239 15478745 ~ 15483879 (+)

Expression


Expression of XLOC_021535(birc7) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Expression of XLOC_021535(birc7) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_01506852_01513139 BIRC7 coding CI01000021 null 1506216 ~ 1513306 (+)