Gene
RNA
| Item | Value |
|---|---|
| gene id | G213103 |
| gene name | commd4 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 102288712 ~ 102292227 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| commd4 | Orthologous to human COMMD4 (COMM domain containing 4). |
| description |
|---|
| COMM domain-containing protein 4 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU242008 | False | 792 | lncRNA | 0.41 | 2 | 102288712 | 102289602 |
| TU242010 | False | 1534 | lncRNA | 0.43 | 6 | 102288712 | 102291053 |
| TU242009 | True | 668 | lncRNA | 0.42 | 4 | 102289924 | 102292227 |
102,286,000
102,287,000
102,288,000
102,289,000
102,290,000
102,291,000
102,291,000
102,292,000
102,293,000
102,294,000
102,295,000
102,296,000
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110501429 | LOC106561864 | coding | upstream | 9829 | 102262117 ~ 102278883 (+) |
| LOC110501421 | LOC106561865 | coding | upstream | 50452 | 102184359 ~ 102238260 (+) |
| LOC110502669 | LOC107698134 | coding | upstream | 120891 | 102038038 ~ 102167821 (+) |
| LOC110516669 | LOC106590745 | coding | upstream | 593228 | 101634630 ~ 101695484 (+) |
| best1 | LOC102229874 | coding | upstream | 917538 | 101345285 ~ 101371174 (+) |
| LOC110501451 | LOC106561861 | coding | downstream | 15270 | 102307497 ~ 102314434 (+) |
| LOC118936918 | NA | coding | downstream | 308391 | 102600618 ~ 102608333 (+) |
| slc24a1 | LOC106561848 | coding | downstream | 390595 | 102682822 ~ 102721240 (+) |
| LOC110501485 | LOC106591986 | coding | downstream | 443310 | 102735537 ~ 102756512 (+) |
| c2h15orf61 | cssa10h15orf61 | coding | downstream | 563663 | 102855890 ~ 102857341 (+) |
| G213102 | NA | non-coding | upstream | 925 | 102287513 ~ 102287787 (+) |
| G213066 | NA | non-coding | upstream | 76944 | 102203671 ~ 102211768 (+) |
| G213065 | NA | non-coding | upstream | 88783 | 102199594 ~ 102199929 (+) |
| G213064 | NA | non-coding | upstream | 89253 | 102193989 ~ 102199459 (+) |
| G213050 | NA | non-coding | upstream | 112255 | 102176211 ~ 102176457 (+) |
| G213104 | NA | non-coding | downstream | 643 | 102292870 ~ 102293088 (+) |
| G213113 | NA | non-coding | downstream | 16066 | 102308293 ~ 102387508 (+) |
| G213129 | NA | non-coding | downstream | 58101 | 102350328 ~ 102352286 (+) |
| G213134 | NA | non-coding | downstream | 69088 | 102361315 ~ 102368565 (+) |
| G213146 | NA | non-coding | downstream | 105884 | 102398111 ~ 102398434 (+) |
| G213055 | NA | other | upstream | 49172 | 102238303 ~ 102239540 (+) |
| G213051 | NA | other | upstream | 110794 | 102177409 ~ 102177918 (+) |
| G212863 | NA | other | upstream | 542738 | 101742899 ~ 101745974 (+) |
| G212690 | NA | other | upstream | 732342 | 101554385 ~ 101561158 (+) |
| G212674 | NA | other | upstream | 772608 | 101509760 ~ 101516104 (+) |
| G213185 | NA | other | downstream | 221980 | 102514207 ~ 102516302 (+) |
| G213221 | NA | other | downstream | 303304 | 102595531 ~ 102599866 (+) |
| G213645 | NA | other | downstream | 387148 | 102679375 ~ 102680096 (+) |
| G213775 | NA | other | downstream | 772090 | 103064317 ~ 103065327 (+) |
| pias1b | LOC106584817 | other | downstream | 829362 | 103087359 ~ 103125059 (+) |
