G213113


Basic Information

Item Value
gene id G213113
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 102308293 ~ 102387508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU242023
cacctactaccataccccgttcagacacctactaccataccctgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctaccaccataccctgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaaggcacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccccgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccccgttcaaagacacctaccaccataccctgttcaaaggcacctaccaccataccccgttcaaaggtacctaccaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccccgttcaaaggtacctactaccataccccgttcaaaggcacctaccaccatacccc
>TU242021
accataccctgttcaaaggtacctaccaccataccctgttcaaagacacctactaccataccctgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctaccaccataccctgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaaggcacctaccaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccccgttcagacacctactaccataccccgttcaaagacacctactaccataccccgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaaggcacctaccaccataccctgttcaaaggcacctaccaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccccgttcaaagacacctaccaccataccctgttcaaaggcacctaccaccataccccgttcaaaggtacctaccaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccccgttcaaaggtacctactaccataccccgttcaaaggcacctaccaccatacccc
>TU242024
accataccctgttcaaaggtacctaccaccataccctgttcaaagacacctactaccataccctgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccccgttcaaagacacctactaccataccccgttcagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctaccaccataccctgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccccgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccccgttcagacacctactaccataccccgttcaaagacacctactaccataccccgttcaaaggtacctactaccataccccgttcaaaggcacctaccaccatacccc
>TU242025
accataccctgttcaaaggtacctaccaccataccctgttcaaagacacctactaccataccctgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccccgttcagacacctactaccataccctgttcaaagacacctactaccataccccgttcaaagacacctactaccataccctgttcaaaggtacctactaccataccccgttcaaaggcacctactaccataccctgttcaaaggtacctactaccataccccgttcaaaggcatatGTTGTAGCTAGGAGCATTAATTTAATATTAAGGTGCAGCACGGCACATTTCAGTCAGAGAATTTGGTAAAAAGTAATTCCAGCTGATTACATATTAAATGTAGATGGAGATCAATCAATTATTGAGTTGACACATCTATGTCACAAATTGAATGAGTCATATTGTTTGAAATGGATTGAGTTGGATTTTTGGTTAAATTAAAATGTGATTCAGAGaaacaaacacattttattttagtAATGAAAAGCAACAAACACCAGTTGAAAC

Function

NR:

description
PREDICTED: proteoglycan 4-like isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242023 False 583 lncRNA 0.42 5 102308293 102387173
TU242021 False 737 lncRNA 0.49 3 102386138 102387173
TU242024 False 573 lncRNA 0.45 6 102386138 102387173
TU242025 True 640 lncRNA 0.45 5 102386138 102387508

Neighbor

gene id symbol gene type direction distance location
LOC110501429 LOC106561864 coding upstream 29410 102262117 ~ 102278883 (+)
LOC110501421 LOC106561865 coding upstream 70033 102184359 ~ 102238260 (+)
LOC110502669 LOC107698134 coding upstream 140472 102038038 ~ 102167821 (+)
LOC110516669 LOC106590745 coding upstream 612809 101634630 ~ 101695484 (+)
best1 LOC102229874 coding upstream 937119 101345285 ~ 101371174 (+)
LOC118936918 NA coding downstream 213110 102600618 ~ 102608333 (+)
slc24a1 LOC106561848 coding downstream 295314 102682822 ~ 102721240 (+)
LOC110501485 LOC106591986 coding downstream 348029 102735537 ~ 102756512 (+)
c2h15orf61 cssa10h15orf61 coding downstream 468382 102855890 ~ 102857341 (+)
skor1b LOC106561870 coding downstream 682225 103069733 ~ 103083283 (+)
G213104 NA non-coding upstream 15205 102292870 ~ 102293088 (+)
G213103 commd4 non-coding upstream 16066 102288712 ~ 102292227 (+)
G213102 NA non-coding upstream 20506 102287513 ~ 102287787 (+)
G213066 NA non-coding upstream 96525 102203671 ~ 102211768 (+)
G213065 NA non-coding upstream 108364 102199594 ~ 102199929 (+)
G213146 NA non-coding downstream 10603 102398111 ~ 102398434 (+)
G213151 NA non-coding downstream 23211 102410719 ~ 102411076 (+)
G213171 NA non-coding downstream 58010 102445518 ~ 102448969 (+)
G213180 NA non-coding downstream 121028 102508536 ~ 102508878 (+)
G213191 NA non-coding downstream 134574 102522082 ~ 102528739 (+)
G213055 NA other upstream 68753 102238303 ~ 102239540 (+)
G213051 NA other upstream 130375 102177409 ~ 102177918 (+)
G212863 NA other upstream 562319 101742899 ~ 101745974 (+)
G212690 NA other upstream 751923 101554385 ~ 101561158 (+)
G212674 NA other upstream 792189 101509760 ~ 101516104 (+)
G213185 NA other downstream 126699 102514207 ~ 102516302 (+)
G213221 NA other downstream 208023 102595531 ~ 102599866 (+)
G213645 NA other downstream 291867 102679375 ~ 102680096 (+)
G213775 NA other downstream 676809 103064317 ~ 103065327 (+)
pias1b LOC106584817 other downstream 734081 103087359 ~ 103125059 (+)

Expression


Co-expression Network