XLOC_021545


Basic Information

Item Value
gene id XLOC_021545
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 15749752 ~ 15756516 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044662
CAGTTTTGCTGCGTGtatgttctttctgtctctctctctctctctctgtaccggCCCTGTCATTTTCTCAGGTACCGCCTACTTTGGAGCACTATTGGCTGACAGGACTGCCAATCCTAATCAGCCGTGTGACGATGACATCTCTCTCTGCCAATCGCGTTCGTTGCAGAGCCCTTTAAAAACGGAAGCGGCAACGGGAGAAatcagctgttgttgttttggcgtGTTGTCTGTTTGGTGGTGTCCGTGTGCGTTGTCGCTATTACTGATGTGTGCTTTGATTGAGATCTATTGATGTTGACTTTGAGTGAGTAACTGATGACTTTGAGTGAGATTTGTTTGAGAGTTCTGACGTGTGTTGCTACAGCTATAGCCCGCTAATGCTCCATTCAAAACCTTCTGTGATTTGACAAGGGAGATCTGGAACAACatagtaagtcacgtgacatacatatttgcacgcaggattattgatgtatagacacactagttagcgaagtgcgctaattttgtatttttatttattagatagagtaagttcagggcgctttgcgctgaagacttttcttttcatattgttattttcttatttagtggattggggaggagattaagggaatgtttttgttatatttatttctttgatttccatgcgcaaacttcagttccctctcctatttgtcttggttcttttcaaatttatcttatggtttgtaaatattgtaaataatgtgggagcaataaatcttttgcggtgctaatttgttgtttgg

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044662 True 773 lncRNA 0.41 2 15749752 15756516

Neighbor

gene id symbol gene type direction distance location
XLOC_021544 NA coding upstream 265873 15478745 ~ 15483879 (+)
XLOC_021543 NA coding upstream 271015 15478184 ~ 15478737 (+)
XLOC_021542 CR759764.1 coding upstream 396503 15353133 ~ 15353249 (+)
XLOC_021541 exosc10 coding upstream 945951 14771979 ~ 14803801 (+)
XLOC_021540 si:rp71-79p20.2 coding upstream 1017860 14590483 ~ 14731892 (+)
XLOC_021547 NA coding downstream 257381 16013897 ~ 16017825 (+)
XLOC_021548 NA coding downstream 277722 16034238 ~ 16034588 (+)
XLOC_021549 NA coding downstream 311736 16068252 ~ 16071383 (+)
XLOC_021550 NA coding downstream 469915 16226431 ~ 16249237 (+)
XLOC_021551 NA coding downstream 510981 16267497 ~ 16268738 (+)
XLOC_021539 CR388373.1 non-coding upstream 1279181 14468003 ~ 14470571 (+)
XLOC_021536 NA non-coding upstream 1514745 14233725 ~ 14235007 (+)

Expression


Co-expression Network