XLOC_021547


Basic Information

Item Value
gene id XLOC_021547
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16013897 ~ 16017825 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044663
TGCATATAATTTATATAAGTTTATGTTTTCAAagataattttttgttgttgagaaaataacccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaacggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagttgttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacattttttttatcatggtctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagacatgtaacttactccagagacgcactaacttgcacagcattaaatggaaaaggctttgtccatgtccagttgaggggCATCAAGAACACGCAGATAGCCTacctgtgtcagcctggacagactgcagttctgctactccatgccaaggcttttgtatggatgtcttgactactactgtgttctctaaaggttttctggaggctccatttgagggcatcaaggacatactgatggccttaaccagtgtcagcctagacagacaggcatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacggtgttctctaaaggtataactggagcaaaacaatagcatccgttacagtgaaatttgtgttcataaaagatatgatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtGTGTGCTTACTGCTCGTAGTAAACACACGCTGATCTGATGAGGGAGAGATATACGCAAACacaattgtatttaatgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggagcatttaatctaaaatattttagtttgtgttctgaagattaacaggACTTGTGGGATGAcacaagtaattaattacagaacctatatgaacacttaatgtgacatgtaatagtgaaatagtggccattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataataatggaataacaaattgcttttactgttgtgtttgtgagagagaatcaaaccatatattctacacattttctaTGTCTatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatacaaaaaaaaaaaaaaaatactacatatttagcatgcagacctgcaaagtgaaGGAGTAATGTCAGGTTAAGATTATAGatgagttttcactattgtgaatgtgaagccattcattcacaatgaattggaatagcaaacctcattattgattttgtaggaaactcacctggtgtttgagaaataaatatgtatttaactgctagactgatatagatgttttagtgttttagtcttgattctttgtccccagtgccatcttttacctcaagtgtttctctcaatctataaaacctcaaacagatgtaatgtatttcacttgtgattcttagttgtgagtgatgttttttattttatttttttactgcagccactttaaaaatgggtattttgtaaactttgtaaacagaattgtattttggagactgtgatggttgaagcgtagtttagttacttagtttaatttagttagtatctgtctttctgaagacggtaacactttacaatacggttgtattagtaagtgttaatgtatttactaacatgaacaaagagcaatgaagcatctttcatataaagaaagtacagttcatgtcagctcagtgcattaatgttaacaagcatacattttgattttaatagcatcaggacatatttcaattaattaaatgattaataaatgctgtacaagtatttgttctttgttcatgttagtaaacattaactttaattcatgaaacctaattaaaaagtgactatttaattgtatgccttttttctgtatttg

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044663 True 2321 lncRNA 0.35 4 16013897 16017825

Neighbor

gene id symbol gene type direction distance location
XLOC_021545 NA coding upstream 257381 15749752 ~ 15756516 (+)
XLOC_021546 CR376835.1 coding upstream 262351 15750018 ~ 15751546 (+)
XLOC_021544 NA coding upstream 530018 15478745 ~ 15483879 (+)
XLOC_021543 NA coding upstream 535160 15478184 ~ 15478737 (+)
XLOC_021542 CR759764.1 coding upstream 660648 15353133 ~ 15353249 (+)
XLOC_021548 NA coding downstream 16413 16034238 ~ 16034588 (+)
XLOC_021549 NA coding downstream 50427 16068252 ~ 16071383 (+)
XLOC_021550 NA coding downstream 208606 16226431 ~ 16249237 (+)
XLOC_021551 NA coding downstream 249672 16267497 ~ 16268738 (+)
XLOC_021552 NA coding downstream 254740 16272565 ~ 16279494 (+)

Expression


Co-expression Network