XLOC_021551


Basic Information

Item Value
gene id XLOC_021551
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16267497 ~ 16268738 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044665
cactgttgtatttacagaagttgtatgagaataagctacaggttgatttatactaatctgttatttttcttttttagcacgactgactgaagttttaaaatcatgcaacgtcataaagcagcagctgggcctgattctaacaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgaccttcctttggccaatttgatttggaaaagcttgaaaatcaactaaaggagcagcccgaacaaatgaagaaactgatggagtgaggacaaatgtccataccacaccactgataaagaagtggaaaaatgcattacaaggtagctacaacttgcccctgacagggatggaagaagaaagaagagaaagctaatgtgtcaaatgtctacatcactattttgttttattttttaaacaacattttaagtgtattaggatgttccctgatacttgaacaatttgtttctttcatttgcatttatatatatatatatatatatatatatatatatatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatatgtatatgtatatatatatatatgtgtgtgtgtatgtgtgtatatatgtatggtatgtatgtatgtatgtgtgtgcgccaaattctgaagaaacatcttgatacatttttaataaacgtaatacaaataaaattataaatataaaattgcacaagacgtgtatatatatgaaatgtataatcatctcactcatgtcttgctgtttgtgcaattgattttgttcaagtttatttatatatatatgtgtgtgtgtgtgtgtttgtttattattattttaatgttttattaaaaaatgtttcaagatgtttcttcagaattctgcagtactttttacaagtttgacttggatattttacggattgtcattggtatttttaagatgtttcttgctatatcttaaattggtttctatatttagg

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060322 head development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044665 True 1001 lncRNA 0.28 3 16267497 16268738

Neighbor

gene id symbol gene type direction distance location
XLOC_021550 NA coding upstream 18260 16226431 ~ 16249237 (+)
XLOC_021549 NA coding upstream 196114 16068252 ~ 16071383 (+)
XLOC_021548 NA coding upstream 232909 16034238 ~ 16034588 (+)
XLOC_021547 NA coding upstream 249672 16013897 ~ 16017825 (+)
XLOC_021545 NA coding upstream 510981 15749752 ~ 15756516 (+)
XLOC_021552 NA coding downstream 3827 16272565 ~ 16279494 (+)
XLOC_021553 AL928725.1 coding downstream 87970 16356708 ~ 16357229 (+)
XLOC_021554 NA coding downstream 137820 16406558 ~ 16407426 (+)
XLOC_021555 ntsr1 coding downstream 161821 16430559 ~ 16525698 (+)
XLOC_021556 CU041345.1 coding downstream 176223 16444961 ~ 16446040 (+)
XLOC_021561 NA non-coding downstream 529362 16798100 ~ 16798722 (+)

Expression


Co-expression Network