LOC118964342


Basic Information

Item Value
gene id LOC118964342
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63916 ~ 74553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975416.1
AACACCACAGCTGATGTGGAAACGTTCAGAGGATCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCACTGGAAGGGTTAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGTGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCActgggagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCActgggagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGTACTCCATGTCACTACCACTAAACATCAGACTCActgggagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATATCACTACCACTAAACATCAGACTCActgggagggttagggttagggtctggaaAACAACACCACAGCTGATGTGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATATCACTACCACTAAACATCAGACTCACTGGAAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCACTGGAAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGAGGATCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACGTCAGACTCACTGGAAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGTGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCActgggagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCActgggagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATATCACTACCACTAAACATCAGACTCACTGGGAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATATCACTACCACTAAACATCAGACTCACTGGAAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAAGTGACCTCCATGTCACTACCACTAAACATCAGACTCActgggagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCActgggagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATATCACTACCACTAAACATCAGACTCACTGGAAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGAGGATCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaCAACAACACCGCAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATATCACTACCACTAAACATCAGACTCACTGGAAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGGGGAAATGTTCAGAGGATCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaaAACAACACCGCAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCACTgggagggttagtgttagggtctGGAAAACAACACCGCAGCTGATGTGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCActgggagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCACTGGAAGGGTTGGGGTCTGGAAAACAACACCACAGCTAATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATATCACTACCACTAAACATCAGACTCACTGGAAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGAGGATCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCacgggaagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATATCACTACCACTAAACATCAGACTCACTGGAAGGGTTGGGGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttaggGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttaggGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttaggGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCActgggagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATATCACTACCACTAAACATCAGACTCACTGGAAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGTGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATATCACTACCACTAAACATCAGACTCACTGGAAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGAGGATCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCACTGGGAGGGTTGGGGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGAGGATCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCACTGGAAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGGGGAAACGTTCAGATTTTCCTATTTTTTCTACCACTGAGGGCCAAGCTGGCACCTCTGAAGAGCCAAGACAAGGCCATGCTACAACCACCCCTTGCAGGATGCAATCCACCATGCATCCTGGTGTTAATTTTCATTGTCCGATAACGCCCTCCCCCTCTACTTCCTCAATCCCTCCTAGCTCGTTTGTTCATGGTGAATTGAGTAGACGTCATGTGGGGGCGATGCACATTAAATTGCAATTTCCCACCTTTGGGAAAAAAGATGACAGTCCGGATCCGCTAATGTACCTAGAAAGATGTCGTGACTTTCTTGCCCTCAATCCCCTGGCTGACGAAGAACTCCTTGCCACATTGAGGAATGTGTTGCATGGGACAGCTCGAGACTGGTGGGATGTGGCACGTCTCACCACTACCTCCTGGGCTGACTTTGAGGCCAAGTTTTCCTCTGCATTTCTGTCTGAGGACTACACAGATGAGCTGGCAGACAGAGTCAGGAATCGAGTGCAAAGCGAGAAAGAGGGTATCCGTGACTTTGCATACGGTTACCACTCCCTGTGCAGAAGGTGGAAACCTGGcattgaggaggaagaggtcattaAATTGATTTTGAAGAACATCAACCCACTACTAGCCAGTCAACTCCGAGAACGAGTCACCACTGTCGATGGACTGGTTCGCTTGGGACAGCAGTTTGAGAAGGACAGAGAATGCcaacagcaatatgaccaaagaAAGAAACAGACACCCAAACAGTTACCCAAGACAGACCATCAACAACAGCTAGAGTCTCCAGCCAAGACCCCTCTCATGTTCTGTTGGAGATGTAACCAAAAGGGACATTCTTCAGCTACATGTCCAAGACCGTATCAAGAAAACCCTTCCAGAAACCACAAATCACAACAGgccaacacacctaactctcttcGCAGGAATGACCATCCTTCTCTGGGTGCTTTAACCAGAGCTGAAATCCCAAGAGTCACTGCCTACGCCCCCCCCATCGACATCCAGAGGCCCATGGACAGGAAGAGCCATCCTGGACACCGGGTCATCCTACACACTGCTCAATGA
>TU244046
CACCACAGCTGATGTGGAAACGTTCAGAGGATCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCACTGGAAGGGTTAGGGTCTGGAAAACAACACCACAGCTGATGTGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCActgggagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATGTCACTACCACTAAACATCAGACTCactggaagggttagggttagggtctggaaAACAACACCACAGCTGATGGGGAAACGTTCAGAGGTTCCTATCCTGGAACAACTGACCTCCATATCACTACCACTAAACATCAGACTCACTGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975416.1 False 5800 mRNA 0.49 7 63916 74553
TU244046 True 435 TUCP 0.48 2 70094 74551

Neighbor

gene id symbol gene type direction distance location
irx4a LOC105016487 coding upstream 73187 147740 ~ 155571 (-)
LOC118944729 NA coding upstream 174485 247153 ~ 252277 (-)
irx2a irx2 coding upstream 436414 510967 ~ 515209 (-)
LOC118964345 NA coding upstream 804447 879000 ~ 881031 (-)
LOC118936608 hacl1 coding upstream 1497124 1571677 ~ 1581702 (-)
G214545 NA non-coding downstream 11888 41654 ~ 52028 (-)
G214549 NA non-coding downstream 28829 29481 ~ 35087 (-)
G214597 NA non-coding upstream 33468 108021 ~ 108619 (-)
G214599 NA non-coding upstream 34801 109354 ~ 110345 (-)
G214609 NA non-coding upstream 49552 124105 ~ 125144 (-)
G214614 NA non-coding upstream 50776 125329 ~ 125719 (-)
G214615 NA non-coding upstream 51295 125848 ~ 129206 (-)
G214663 NA other upstream 103170 177723 ~ 179591 (-)
G214982 NA other upstream 406494 481047 ~ 481609 (-)
G215354 NA other upstream 841406 915959 ~ 919673 (-)
G215950 NA other upstream 1525673 1600226 ~ 1618140 (-)
G215956 NA other upstream 1584527 1659080 ~ 1682022 (-)

Expression


Co-expression Network