LOC118964345


Basic Information

Item Value
gene id LOC118964345
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 879000 ~ 881031 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975420.1
ATGAGAAAGCTGGGAGGACCCACCAAAGGCTCAGAGATCAGGGATAATCTGACACCCCAAAGCCTAATCTTCTTAGTGGACCAGGATAAGATGACCCCCTACATACCCACCCCCCCAGCCCCCTCCATACCCACCTCCACCAATCCCCCCCAGCCCCCTCCATACCCACCCCCACCAGTCCCCTCCATACCCACCACCACCAGTCCCCTCAATACCCACCCCCCCAGCCCCCTCCATACCCACCTCCACCAGTCCCCCCCAGCCCCCTCCATACCCACACCCACCAGTCCCCTCCATACCCACCACCACCAGTCCCCTCCATACCCACCCCCACCAGCCCCCTCCATACCCACCCCCACCAGTCCCCTCCATACCAACCCCCACCAGTCCCCTCCATACCCACCCCAACTAGCCCCCTCCATACCCACCCCCACCAGCCCCCTCCCAGTCCCCCCAGCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCCTCCATACCCACCCCCACCAGCACCCTCCATACCCACCCCCACCAGCCCCCTCTCATCCCCTCCATACCCACCCCCACCAGTCTCCTCCATACCCACCCCCACCAGCCCCCCCAGCCCCCTCCATACCCACCCACACCAGCCCCTCCATACCCACCCCCACCAGCCCCCTCCATACCCACCCCAAATAGCCCCCTCCATACCCACCCCCACCAGTCCCCTCCATACCCACCCCCACCAGTCCCCTCCATACCCACCCCCACCAGCCCCCCCCAGCCCCCTCCATACCCACCCCCACCAGCCCCCTCCATACCCACCCCCACCAGTCCCCCCAGCCCCATCCTGGCTCCACCCAGCCCCTCCTGGCCCCACCCAGTCCTTCCAGCCCCCTCCTGGCCCCACCCAGTCTTACCAGCCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCCTCCTGGCCCCTCCCAGTCCCCCCAGCCCCATCCTGGCTCCACCCAGCCCCATCCTGGCTCCACCCAGCCCCATCCTGGCTCCACCCAGCCCCTCCTGGCCCCACCCAGTCCTTCCAGCCCCCTCCATACCTACCCCCACCATTCCCCTCCCAGTCCCACCAGTCCCATCCTGGCTCCACCCAAACCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCTTCCTGGCCCCTTCCAGCCCCCCCCACCAGCCCCCTCCCAGTCCCCCCAGCCCCATCCTGGCTCCACCCAGCCCCTCCTGGCCCCACCCAGTCCTTCCAGCTCCCTCCTGGCCCCACCCAGTCTTACCAGCCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCTTCCTGGCCCCTCCCAGCCCCCCCCACCAGCCCCATCCTGGCTCCACCCAGCCCCTCCTGGCCCCACCCAGTCCTTCCAGCCCCCTCCTGGCCCCACCCAGTCTTACCAGCCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCTTCCTGGCCCCTCCCAGCCCCCCCCACCAGCCCCATCCTGGCTCCACCCAGCCCCTCCTGGCCCCACCCAGTCCTTCCAGCCCCCTCCTGTCCCACCAGCCCCCTCCTGGCCCCTCCCAGTCCCACCAGCCCCTTCCTGGCCCCTCCCAGCCCCCCCCACCAGCCCCTTCCTGGCCCCTCCCTCCCAGCACCATGTCCCTCTGATAGCCATTTTAGCCAGCATGGAGACAATGGCCTGGTCCGGGACTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975420.1 True 1773 mRNA 0.70 4 879000 881031

Neighbor

gene id symbol gene type direction distance location
irx2a irx2 coding downstream 363791 510967 ~ 515209 (-)
LOC118944729 NA coding downstream 628452 247153 ~ 252277 (-)
irx4a LOC105016487 coding downstream 723429 147740 ~ 155571 (-)
LOC118964342 NA coding downstream 804447 63916 ~ 74553 (-)
LOC118936608 hacl1 coding upstream 690646 1571677 ~ 1581702 (-)
LOC118944736 NA coding upstream 693333 1574364 ~ 1575575 (-)
LOC118944735 LOC106595845 coding upstream 702085 1583116 ~ 1593615 (-)
LOC118944737 NA coding upstream 726010 1607041 ~ 1609598 (-)
LOC110519742 LOC106595845 coding upstream 780629 1661660 ~ 1673583 (-)
G215297 NA non-coding downstream 17372 861312 ~ 861628 (-)
G215265 NA non-coding downstream 49032 829254 ~ 829968 (-)
G215263 NA non-coding downstream 50452 828145 ~ 828548 (-)
G215246 NA non-coding downstream 92342 786231 ~ 786658 (-)
G215241 NA non-coding downstream 95962 782412 ~ 783038 (-)
G215316 NA non-coding upstream 6366 887397 ~ 889458 (-)
G215364 NA non-coding upstream 55136 936167 ~ 936552 (-)
G215384 NA non-coding upstream 56032 937063 ~ 995851 (-)
G215402 NA non-coding upstream 99643 980674 ~ 981454 (-)
G215418 NA non-coding upstream 117426 998457 ~ 1006363 (-)
G214982 NA other downstream 397391 481047 ~ 481609 (-)
G214663 NA other downstream 699409 177723 ~ 179591 (-)
G215354 NA other upstream 34928 915959 ~ 919673 (-)
G215950 NA other upstream 719195 1600226 ~ 1618140 (-)
G215956 NA other upstream 778049 1659080 ~ 1682022 (-)
LOC110516567 LOC106595628 other upstream 1045713 1916571 ~ 1953363 (-)

Expression


Co-expression Network