XLOC_021554


Basic Information

Item Value
gene id XLOC_021554
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16406558 ~ 16407426 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044667
CTACGTCACAGGCTGTAATAGATACAGATTTGGTAGAGGTTGTGGTGGTCAGCGAATCAGCCGCTGAGACGTCAGAGACTTCGTCGCGATCTGTTGCCACACAGACAGAGGACGCGTCTTTTGAATTGAACACGGACGAGACAACATCTCCGAGGTCTGGACACGCTGACGGGTCAACCACTGGATATGGTCTTGGCCAGAATAAGAAAATACTTTCAAAACCTGACAACGATTCTGACGAAGAGAAAGaacaAAATTACGAATCCAAAGGAGCAGATCTCTGGCATGAGAATGAAGAGAATGTGATAGAAGGAGCATATGATGAAGAGTCTTGTGATATTGAAAAACACGTACCAGGagaaattttagatttatttagaccGAGAGATCTAGCACATTTGAACTATGAAATTATGTGCCGGGCAAACCGTAACTTCGAACGAGTTTTACAATTGAATTCAGCGGCGCTGACCTTCGAAGAAACCACTGATGCTGTGAGAACTGGTCAGGATCTGGTTATAAACATTTTACAGAGTGTTGTCAACTTCCAACATCAGAATGCAGAAGTTCTAGCACAGAGCGCCTTATTTTGGAGGAGCTGTCACGAGGAAAACCAACAACggtttcaagatttttttcagtACATTTTCGGTGTACCAGAAAAGGTAGAGGAACACAGAAACGAATTACGGCTACTTGTTAACGGGGTCACCCTTCTAGGTGAGAGATTAAATGTTATCCAACGTATGACAAGTGACATGTACAAGATActtacaaaataacaa

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044667 True 785 lncRNA 0.43 2 16406558 16407426

Neighbor

gene id symbol gene type direction distance location
XLOC_021553 AL928725.1 coding upstream 49329 16356708 ~ 16357229 (+)
XLOC_021552 NA coding upstream 127064 16272565 ~ 16279494 (+)
XLOC_021551 NA coding upstream 137820 16267497 ~ 16268738 (+)
XLOC_021550 NA coding upstream 157321 16226431 ~ 16249237 (+)
XLOC_021549 NA coding upstream 335175 16068252 ~ 16071383 (+)
XLOC_021555 ntsr1 coding downstream 23133 16430559 ~ 16525698 (+)
XLOC_021556 CU041345.1 coding downstream 37535 16444961 ~ 16446040 (+)
XLOC_021557 snphb coding downstream 213375 16620801 ~ 16642181 (+)
XLOC_021558 fbxo44 coding downstream 341380 16748806 ~ 16757755 (+)
XLOC_021559 si:rp71-1k13.6 coding downstream 353419 16760845 ~ 16773279 (+)
XLOC_021561 NA non-coding downstream 390674 16798100 ~ 16798722 (+)
XLOC_021565 AL732515.2 non-coding downstream 451491 16858917 ~ 16859033 (+)
XLOC_021571 BX927275.1 non-coding downstream 738889 17146315 ~ 17211806 (+)
XLOC_021573 NA non-coding downstream 847072 17254498 ~ 17254757 (+)

Expression


Co-expression Network