LOC118936608 (hacl1)


Basic Information

Item Value
gene id LOC118936608
gene name hacl1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1571677 ~ 1581702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965348.1
TCGCATAAACGGGTCATGCTTTGGGCAGCAGTGCCAGAAGTCGTCCAGTCACTCAAGTTTGCACTCTGTGGAGTAAGTGGCTATCGAAATATCTATCGATTGTCGCTACTCATATAATGCATTTTGTAATGCGGACAAAAACCAATGATTTGCAAGAGATCTAAAAACGACGTATAAGCTATTGAGTATCACTAACAGATTTCTGGACAGTAATAATGGAAGATGTGACAGGCGCTCAGCTCATTGCTGAGGCACTAAAAGCTCAGAATGTAGAGTATATGTTTGGAATAGTTGGTGTTCCAGTCATTGAAGTGGCTATGGCAGCTCAAGCCTCAGGAATCAAGTATGTGGGAATGCGCAATGAACAAGCCGCTTGCTATGCTGCGTCTGCTGTTGGTTACCTCACTGGACGTCCAGGGGCGTGTCTGGTTGTGTCTGGACCGGGACTCATCCATGCTCTTGGTGGAATGGCCAACGCTAACATGAACTGCTGGCCTGTGATTGTTATTGGAGGCTCCTCCGATCAAAACCAGGAGACCACTGGGGCGTTTCAAGAGTTTCCACAGGTGGAGGCGTGCAGACTGTACAGTAAGTTCTCAGCTAGGCCCAGCAGTCTGGATATGATCTCCTCAGTGGTAGAGAAGGCAGTACGCACTAGCATGTATGGACGTCCCGGTGCTGTATACGTAGACATATCTGGGGACATGGTCAATGCTAAAGTGGACAGGAGCAGAGTCAGAGAGGTGCCCTGTTGTCCACCTCCTCCAGTGAGTATGGCTGACCATATGGCGATCACAGAAGCACTGGCTGTTCTAAAAGGAGCCAAACGGCCTTTACTCATCATTGGGAAAGGTGCAGCCCATGGAAGAGCAGAGGGGGCTCTGAGGGAGCTGGTGGAGGGGTGTGGCCTGCCCTTCCTGCCCACCCCCATGGGTAAAGGGGTGCTGCCTGACGACCACCCCAACTGTGTTGCTGCTGCCCGCTCCAGAGCTCTGCTCCAGTCTGATGTTGTGGTCCTACTTGGTGCCAGGCTCAACTGGATCCTGCACTTTGGCCTTCCCCCCAGGTTTGACCCCCATGTAAAGGTCATCCAGGTTGATCTATGTGCAGAGGAGATGGGGAACAACATGCAACCTGCTGCGGCTCTCCTGGGGGACGTCAATGCTATTGTCAAGCAGATCCTAGAGTATGTTCATAAAGATGGCTGGAAGTATCCAGCTGATACAGAATGGTGGACCACATTGAAAGAGAAGATGGCTGCTAACGCAACAATGACaaagGCATTAGCTCTTCAGTCAACAACACCCATGAACTACTACCAAGTGTTCCACCACATCTCCCAGCTGCTGCCCCACGACTGTGTCATCGTGAGTGAGGGGGCCAACACCATGGACATTGGGCGTACCATGTTGAACAACTACCTTCCTCGACACAGGTTGGATGCTGGCACCTTTGGGACGATGGGGGTGGGTCTGGGCTTTGCCATCGCGGCTGCAACAGTGCAGAGGAACCAGAACACAGGccagagggtggtgtgtgtggagGGCGACAGTGCCTTTGGATTCTCTGGGATGGAGGTAGAGACCATGTGCAGGTATAAGCTCCCGGTGGTCATCATCGTGGTCAACAACAACGGGATCTACAGCGGCGTGGATGCAGAGACGTGGGAAAtgatggggaagatgggagatCTCACCACTGTagccCCCCCTGTGACCCTGCTGCCTGAAGCCCGCTATGATGAGGTCATGAACGCCTTCGGAGGACGAGGGTTCCTGGTGCGGACAGAGGAAGAGCTGCGTAGTGCCTTACAGCTCAGCCTCAGTGACTGGGAGAGACCTAGTCTCCTCAACGTCCTCATAGACCCCTCCTCAGACAGGAAGCAACAGgAGTTTCCATGGCTAACTCGCTCCAACCTGTAGGCCAGTGAGGAAGACCTGCTTCCTTCTGCCACCTGATGGACAAATtgggtacatcccaaatggcaacctctTCTCTATAAGTTTCattctctatgggtcctggttaaaagtagtgcactaaatagggaatatggtgccatttggtatgcagCCCTTGTCAGTGAAGTTTCTCTCTATAACGTGGTGTTTGGAGACTGACAGCTCCTCTCTCGACCATGAGAAGGCTGCATGTGTTTTTGTATCTAATAAAGAATCATGTTTCTATGAAATGTTTTAATCAAGTCACATTTACTACACGGTAGTATTACATTTTCGATTTTGGAAATTTATACCATGATTAAGATGTAGATTTGTGAGAAAATGTCAGGTATAATATTTGTCTTTGGCTTGTTTACTATATTTGTACAAGTGTCCTTGAAAATAAACTTTGTTGCAGACAAACTGAAAGATA
>TU245728
ttcctctcttcctatcctcctgGTTCTATGGTCTTGGTGTGGACTGCAGAGCTCTGCTCCAGTCTGATGTTGTGGTCCTACTTGGTGCCAGGCTCAACTGGATCCTGCACTTTGGCCTTCCCCCCAGGTTTGACCCCCATGTAAAGGTCATCCAGATCCTAGAGTATGTTCATAAAGATGGCTGGAAGTATCCAGCTGATACAGAATGGTGGACCACATTGAAAGAGAAGATGGCTGCTAACGCAACAATGACaaagGCATTAGCTCTTCAGTCAACAACACCCATGAACTACTACCAAGTGTTCCACCACATCTCCCAGCTGCTGCCCCACGACTGTGTCATCGTGAGTGAGGGGGCCAACACCATGGACATTGGGCGTACCATGTTGAACAACTACCTTCCTCGACACAGGCAAGGCATGCCGCCTCACACAAGTATTTTCCCTGTAGGCAAGTAGGAATTAGTTGTTGTTGTCCAGGAACCTGACAGGTTGACTGGATTACTTTTCAATGTAGTGCTGCCTGACAGGTTGACTGGATGACTTCTCAATGTAGTGCTGCCTGGCAGGCTGACTAGATGACTCCTCAATATAGTGCTGCCTGACAGGTTGACCTCTCAATATAGTGCTGCCTGGCAGGCTGACTAGATGACTTCTCAATGTAGTGCTGCCTGACAGGTTGACTGGATGATTATTCAATATAGTGCTGCCTGAC

Function

symbol description
hacl1 Predicted to enable thiamine pyrophosphate binding activity. Predicted to be involved in fatty acid alpha-oxidation. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in peroxisome. Orthologous to human HACL1 (2-hydroxyacyl-CoA lyase 1).

NR:

description
LOW QUALITY PROTEIN: 2-hydroxyacyl-CoA lyase 1, partial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965348.1 False 2373 mRNA 0.50 17 1571677 1581702
TU245728 True 714 lncRNA 0.49 3 1573282 1576916

Neighbor

gene id symbol gene type direction distance location
LOC118964345 NA coding downstream 690646 879000 ~ 881031 (-)
irx2a irx2 coding downstream 1056468 510967 ~ 515209 (-)
LOC118944729 NA coding downstream 1321129 247153 ~ 252277 (-)
irx4a LOC105016487 coding downstream 1416106 147740 ~ 155571 (-)
LOC118964342 NA coding downstream 1497124 63916 ~ 74553 (-)
LOC118944735 LOC106595845 coding upstream 1414 1583116 ~ 1593615 (-)
LOC118944737 NA coding upstream 25339 1607041 ~ 1609598 (-)
LOC110519742 LOC106595845 coding upstream 79958 1661660 ~ 1673583 (-)
LOC118944740 LOC106595845 coding upstream 158259 1739961 ~ 1750262 (-)
LOC118944751 LOC106595628 coding upstream 168717 1750419 ~ 1755795 (-)
G215806 NA non-coding downstream 37751 1523294 ~ 1533926 (-)
G215807 NA non-coding downstream 40687 1521400 ~ 1530990 (-)
G215804 NA non-coding downstream 53472 1491111 ~ 1518205 (-)
G215805 NA non-coding downstream 77114 1491957 ~ 1494563 (-)
G215790 NA non-coding downstream 82891 1488532 ~ 1488786 (-)
G215813 NA non-coding upstream 278 1581980 ~ 1582274 (-)
G215946 NA non-coding upstream 13616 1595318 ~ 1676448 (-)
G215951 LOC100136727 non-coding upstream 49079 1630781 ~ 1642993 (-)
G215954 NA non-coding upstream 63452 1645154 ~ 1719959 (-)
G215354 NA other downstream 652004 915959 ~ 919673 (-)
G214982 NA other downstream 1090068 481047 ~ 481609 (-)
G214663 NA other downstream 1392086 177723 ~ 179591 (-)
G215950 NA other upstream 18524 1600226 ~ 1618140 (-)
G215956 NA other upstream 77378 1659080 ~ 1682022 (-)
LOC110516567 LOC106595628 other upstream 345042 1916571 ~ 1953363 (-)
G216038 NA other upstream 476213 2057915 ~ 2058429 (-)

Expression


Co-expression Network