XLOC_021555 (ntsr1)


Basic Information

Item Value
gene id XLOC_021555
gene name ntsr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16430559 ~ 16525698 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042791
GAACGATGCGCTTGTGCAGACCTTTGAGAGTTAGTCCTCAGCAGTGAATACGGCAGTTTTACGCACAGCTCATGTACAAACGTGGCACACTTCGCGTTTATTTTGCCATTCGTTAGTAAGTGTTGACGCTTAAAGACTATCATGGAGGTTAATACTACTCTATCAAAACGCAACTTAGACTTGCGCATCTTGGCGCAGAAACTTCTTTCTTCGGCGAACCGGTCACAGCCATTTCTGGACAACGAAACGGAGAGCTTATCAGAGGAGGATTTGGACGTGAATACAGACATCTATTCTAAAGTTTTGGTGACTGTGATTTACGTGGTGTTGTTTTTAATTGGGTGTTTGGGAAACTCGATCACCTTATACACACTTCTCACCAAGAAATCTCTCCAAAACCTCCAGAGCACGGTGCACTATCACCTGGCGAGTCTGGCCATATCCGACCTGCTCATCCTGGTCCTCTGCATGCCAATTGAGTTGTACAACTTCATCTGGGTGCACCACCCGTGGGCTTTTGGGGAGGCTGTATGTAAAGGCTACTACTTTCTCCGGGACGGCTGCTCGTACGCGACGGCGTTCAACATCGCCAGCCTGAGCGTGGAGCGCTTTATGGCCATCTGCCACCCGTTCAAGGCGAAGAGCATCATGTCGCGGAGCCGCACCAAGAAACTCATCAGTGCCATGTGGATAGCCTCATTTTTCCTCGCCACTCCGATGCTCTTCACGATGGGACAGCAACTGATGAACGATGAATATATATGTACAACCATCGTGTCCTCGATAACTGCTAAAACCGTCCTACAGTTGAATGCCTTCCTGTCATTTGTGGTCCCCATGGCACTGATCTCAGCATTAAATGGAGTCATAGCCAGTCAGCTGCTGCGCATGTTTCGGGAGTCTGCCCAGGACAACCGTGTCTGTATCATTGGAGGAAATGCTACCATGCTCAGTGTTGCTGTTGAGCCCAATCGTGCCCAGTCAATGCGCCATGGAGTCATGGTTCTGCGGGCCGTGGTCATTGCTTTTGTGGTGTGCTGGCTGCCCTACCATGCCCGGAGACTAATGTACTGCTATGTCACTGAATGGACAACTGCTCTCTACGATTTCTACCACTACTTCTACATGGTCACCAATGTGCTCTTCTATGTCAGCTCGGCTATCAACCCCATCCTCTACAACCTCGTCTCAGCAAACTACAGGCAAATTTTTTTTTCCACGCTTCGCTACCTAATCCTGCCATGCCGCCATAAGAAGCAGAAGCGCGTTCTTACCAGACACTCTATCAGCATCTGCAGCAACCAGACCTTTTCCACCAATGTCATCAAAGAAACCATTTACTGA
>TCONS_00042793
aaaaaaaaaaaattgtgcagtTCAGGGTCTGCCCATTGTGTACTTATCCctctttattttctgtatttCCTCAAGTTGAATGCCTTCCTGTCATTTGTGGTCCCCATGGCACTGATCTCAGCATTAAATGGAGTCATAGCCAGTCAGCTGCTGCGCATGTTTCGGGAGTCTGCCCAGGACAACCGTGTCTGTATCATTGGAGGAAATGCTACCATGCTCAGTGTTGCTGTTGAGCCCAATCGTGCCCAGTCAATGCGCCATGGAGTCATGGTTCTGCGGGCCGTGGTCATTGCTTTTGTGGTGTGCTGGCTGCCCTACCATGCCCGGAGACTAATGTACTGCTATGTCACTGAATGGACAACTGCTCTCTACGATTTCTACCACTACTTCTACATGGTCACCAATGTGCTCTTCTATGTCAGCTCGGCTATCAACCCCATCCTCTACAACCTCGTCTCAGCAAACTACAGGCAAATTTTTTTTTCCACGCTTCGCTACCTAATCCTGCCATGCCGCCATAAGAAGCAGAAGCGCGTTCTTACCAGACACTCTATCAGCATCTGCAGCAACCAGACCTTTTCCACCAATGTCATCAAAGAAACCATTTACTGA

Function

symbol description
ntsr1 Predicted to enable G protein-coupled neurotensin receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in dopaminergic neurons; forebrain; and hindbrain. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human NTSR1 (neurotensin receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016492 G protein-coupled neurotensin receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-090313-372 Predicted to enable G protein-coupled neurotensin receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in dopaminergic neurons; forebrain; and hindbrain. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human NTSR1 (neurotensin receptor 1).

Ensembl:

ensembl_id ENSDARG00000077577

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042791 False 1344 mRNA 0.49 4 16430559 16525698
TCONS_00042793 True 612 mRNA 0.48 3 16469530 16525698

Neighbor

gene id symbol gene type direction distance location
XLOC_021554 NA coding upstream 23133 16406558 ~ 16407426 (+)
XLOC_021553 AL928725.1 coding upstream 73330 16356708 ~ 16357229 (+)
XLOC_021552 NA coding upstream 151065 16272565 ~ 16279494 (+)
XLOC_021551 NA coding upstream 161821 16267497 ~ 16268738 (+)
XLOC_021550 NA coding upstream 181322 16226431 ~ 16249237 (+)
XLOC_021557 snphb coding downstream 95103 16620801 ~ 16642181 (+)
XLOC_021558 fbxo44 coding downstream 223108 16748806 ~ 16757755 (+)
XLOC_021559 si:rp71-1k13.6 coding downstream 235147 16760845 ~ 16773279 (+)
XLOC_021560 zgc:153722 coding downstream 248891 16774589 ~ 16788230 (+)
XLOC_021561 NA coding downstream 272402 16798100 ~ 16798722 (+)
XLOC_021565 AL732515.2 non-coding downstream 333219 16858917 ~ 16859033 (+)
XLOC_021571 BX927275.1 non-coding downstream 620617 17146315 ~ 17211806 (+)
XLOC_021573 NA non-coding downstream 728800 17254498 ~ 17254757 (+)
XLOC_021576 NA non-coding downstream 886827 17412525 ~ 17447163 (+)

Expression


Co-expression Network