LOC118944747 (LOC100136727)


Basic Information

Item Value
gene id LOC118944747
gene name LOC100136727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1701756 ~ 1704997 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965430.1
atgatcatgggaggtgtgagagaattgctgctcgttgtgatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagagctgtcatcaaatgacgtctccattgtgcatgccctggccttgctccgatccatagggtctgacgctaaacaagccagagaagAGTATTTAGAGACCAATGAAGTAGAATCCCAAGCTTCTCCAAACCATGGTAGCTCTCCGGCAAATGATGCCCTGTCCTCTGAGGAGAAGCTGAGGCGCGTGTCCTcggacgacgccgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtccggcgacgacgccatggatatctga

Function

NR:

description
polysialoglycoprotein precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965430.1 True 1629 mRNA 0.67 5 1701756 1704997

Neighbor

gene id symbol gene type direction distance location
LOC118944749 LOC100136727 coding upstream 4146 1695713 ~ 1697610 (+)
LOC118944750 LOC100136727 coding upstream 10185 1689758 ~ 1691571 (+)
LOC110512625 LOC100136727 coding upstream 40787 1653564 ~ 1660969 (+)
LOC118944469 LOC100136727 coding upstream 57400 1635598 ~ 1680107 (+)
LOC118944468 LOC100136727 coding upstream 64204 1630106 ~ 1637552 (+)
LOC118944744 LOC100136727 coding downstream 4111 1709108 ~ 1717917 (+)
LOC118944745 LOC100136727 coding downstream 27921 1732918 ~ 1736240 (+)
LOC118936264 LOC100136727 coding downstream 50969 1755966 ~ 1763658 (+)
LOC118944753 LOC100136727 coding downstream 62795 1767792 ~ 1769926 (+)
LOC118944754 LOC100136727 coding downstream 69076 1774073 ~ 1776834 (+)
G215828 NA non-coding upstream 19726 1659224 ~ 1682030 (+)
G215815 NA non-coding upstream 32178 1589307 ~ 1669578 (+)
G215792 NA non-coding upstream 124726 1489352 ~ 1577030 (+)
G215795 NA non-coding upstream 207197 1491937 ~ 1494559 (+)
G215782 NA non-coding upstream 218462 1482009 ~ 1483294 (+)
LOC118944761 LOC100136727 non-coding downstream 114425 1819422 ~ 1827499 (+)
G215853 NA non-coding downstream 218312 1923309 ~ 2021561 (+)
G215894 NA non-coding downstream 308870 2013867 ~ 2014326 (+)
G215900 NA non-coding downstream 318088 2023085 ~ 2023300 (+)
G215904 NA non-coding downstream 325763 2030760 ~ 2030962 (+)
G215820 LOC100136727 other upstream 85377 1609638 ~ 1616379 (+)
G215455 NA other upstream 615226 1084442 ~ 1086530 (+)
G215012 NA other upstream 1183569 516360 ~ 518187 (+)
G215843 LOC100136727 other downstream 99391 1804388 ~ 1805255 (+)
ahr1a LOC106605709 other downstream 255871 1960781 ~ 1987480 (+)
G216353 NA other downstream 756220 2461217 ~ 2462744 (+)
G216438 NA other downstream 867398 2572395 ~ 2574899 (+)
LOC110506718 LOC102207154 other downstream 1312167 3017105 ~ 3022686 (+)

Expression


Co-expression Network