LOC118944758 (LOC100136727)


Basic Information

Item Value
gene id LOC118944758
gene name LOC100136727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1882585 ~ 1884906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118944758
atgatcatgggaggtgtgagagaattgctgctcgttgtgatgactgtgggggttgtcaaagtttcttgttaccctgttggaaagtcccagaagcaagatcaagtctctctgcagaggagacttggagAGCTGTCATCAAATGACGTCTCCATTGTGCATGATCGGCCTTGCTCCGATCCATAGGGTCTGACGCTAAACAAGCCAGAGAAGAGTATTTAGAGACCAATGAAGTAGAATCCCAAGCTTCTCCAAACCATGGTAGCTCTCCGGCAAATGATGCCCTGTCCTCTGAGGAGAAGCTGAGGCGCATGTCCTcggacgacgccacctctgacgctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgac

Function

NR:

description
apopolysialoglycoprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118944758 True 1844 mRNA 0.68 4 1882585 1884906

Neighbor

gene id symbol gene type direction distance location
LOC118944757 LOC100136727 coding upstream 4501 1875760 ~ 1878084 (+)
LOC118944756 LOC100136727 coding upstream 19359 1860933 ~ 1863226 (+)
LOC118944761 LOC100136727 coding upstream 55086 1819422 ~ 1827499 (+)
LOC118944763 NA coding upstream 62897 1813134 ~ 1819688 (+)
LOC118944754 LOC100136727 coding upstream 105751 1774073 ~ 1776834 (+)
ahr1a LOC106605709 coding downstream 75875 1960781 ~ 1987480 (+)
LOC110513668 LOC106595161 coding downstream 125371 2010277 ~ 2123904 (+)
abcb5 LOC106574003 coding downstream 373645 2258551 ~ 2284314 (+)
LOC118944474 NA coding downstream 529565 2414471 ~ 2419132 (+)
fhod3b fhod3 coding downstream 721117 2606023 ~ 2853339 (+)
G215828 NA non-coding upstream 200555 1659224 ~ 1682030 (+)
G215815 NA non-coding upstream 213007 1589307 ~ 1669578 (+)
G215792 NA non-coding upstream 305555 1489352 ~ 1577030 (+)
G215853 NA non-coding downstream 38403 1923309 ~ 2021561 (+)
G215894 NA non-coding downstream 128961 2013867 ~ 2014326 (+)
G215900 NA non-coding downstream 138179 2023085 ~ 2023300 (+)
G215904 NA non-coding downstream 145854 2030760 ~ 2030962 (+)
G215906 NA non-coding downstream 147244 2032150 ~ 2032404 (+)
G215843 LOC100136727 other upstream 77330 1804388 ~ 1805255 (+)
G215830 NA other upstream 135303 1670411 ~ 1747282 (+)
LOC118944469 LOC100136727 other upstream 202478 1635598 ~ 1680107 (+)
G215820 LOC100136727 other upstream 266206 1609638 ~ 1616379 (+)
G216353 NA other downstream 576311 2461217 ~ 2462744 (+)
G216438 NA other downstream 687489 2572395 ~ 2574899 (+)
LOC110506718 LOC102207154 other downstream 1132258 3017105 ~ 3022686 (+)
G216640 LOC106606088 other downstream 1155080 3039986 ~ 3041517 (+)

Expression


Co-expression Network