LOC110515047 (LOC106595845)


Basic Information

Item Value
gene id LOC110515047
gene name LOC106595845
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1906137 ~ 1910903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965548.1
GAGACTTCAACCAGAAGATGGACTCAATTTCGAAATTGGAGAGCCTCAGCCGAGATTGCCAAGCTCACGCGATCTCGTAGTGCAGCCAGCAGAACCTCTAACATTTCCATCCAGAGCTTTCACAGTGCTGAGTTCCAAGCTACGGCCAAACAGATTGTGCGTGAGGCCATTATCAGAGCTGCTAGCGAAGCCAACTGTTCTTTGCCACAGTGCATGCCTAGCAGCACCTTCTCACACCATGTGGTTTCTACAACTAAAGATATAGTGAATATGATCATGCAAGACCTTGAAAGTCTATCCCAGTACATAGAGGATGACGCAGACTCCTTCCCACTAGGAGAGAAAAAGCTGCAGTCCCAGAGTTGTCTTTGACACCTTATTGGATGCTGCTCAAACCTTGTACCACAGAGTAAAGGTTAGACCATGTCAGTCACCATAGCCAAAGATGTGCTGGACTCCACCCCTGTGGAGACACTCAGATGCTCAAAGTCCCCTGACACTGCTCTTGTTAAGGACAGGAACCGCCCTCCGTCTGTGAGAAGTGAGAAGCCATTTTCAAAAGTCAGTTTGACTAAAAGGTCTAAAGCCCTTGTGTCTTCGAGTGGCTCCTCCACAGACCACCATGTAATTGACACATGCAGTGAGGATGTCACTCTGCCCCCCAGGAGTATGTCGGTTGTGAGCGACACCAGTTTGAAGAGAACCTCTCCTCTCCATGGTAGTGGATTGAGTGCAAGTTGTGAACCTCTTGTGGCTCTACAAGACAGAACAGTGGCAGTCAGCCAAGAAGGCTTTAGCAAAACTGCAAAGGATTGGCCAACTGAGAGTTCATCTGTTGGGCAGAATGCAAGTGAGGAGTGTTTGATAGCCACTAACATGTTAGACTCTCTACTGGAGAGCCTTGACCTGTTGCCTGACATGAGTGCTGCCAATGAGATCACAAGGACAGAATGCCATACCTCTAACGCAATGGACAAGACAGGTTCACAGTCAGCGCTTGTGAGTCAACAAGAAATAAACATATCTGACACCAGTCTCATAGTGAAAACTATAATGGACACATTGAAGACAGACGACCCAGAGATGACTTCAGCAGAAGAAAATCTGGATAGACTCCTGTCAATTGAAGCCCTTCAAGATGCGTCTGGCAACCTGATCGCAAAGGTCCATGGTCTCATTCAGGAGATAACCATAAGCCGCCAGCTTCAATCCACGACTGGCCACAGAAGCCTCTCTCAACCAGCGCTGCCAAAGCCAGCACTGAGGAAGCTGTCAAAGGACGATGCGTCAGAGCTCGTTTACAGCTTTGCCCAGACTTCTGTTAGCAGACTCCTGGGGCAGTGTTTGGTTAGGCCTATGCCACCCACCGCTGACAGGGTTTTGGATCAGGTCATCAAGTTGATGACAGACATGGTGATGGACAGCCTGACTGATCTGTCCAAGTCTGCAATGGAGGATGGTAAGTGAAAGTACCTCTTCATCTGCATAGGACTTCATTGTAACATGATGCTCATTACATTGCGTTTTATGATGTAAACTTCACtggttgtgtccaaaatggcaccttccatgtttagtgcactacttttgaccctatgggccctgttcaaaagtagtgcactataaatggaagaGAATGGCTTTTGGGACGCAGTGACTGACTTCCGTGGTTGCGTTCTCTTCTCCCAGTTATTGTACCCAGCTCGGTCACACCAGCTTGCTCTTCTTACTCAGACACCAGCAATGCCGCAAGTGACATCACTCATGGTATTGTGGCTGACCTTAATGCTACTGAGGAATTCCCTGCCAGTGGCCTTAGCCCAGCTGATGTAAAGGCTGACGGCATGGCCCACCTTCCCTCTGCCAGGGGGGAAGAGACTAAGAAGAACAGGAAGTGGCATTTCCTACCCAAAATTGTCAAGATTCCAAAGATCAGGATTAAGGTAGAGGGCTCAGTGTCTTTAGATTACCTCTGTAAGGCAGGGCTGAAATGTACCCTACAGATTCACTAAACCCCTATTGTCTCTGCATTAGAACAATGCTGTTGTCATTGTCTTTAGGAGGTTGAGTGAGGCCGCTGTAATACAATCCTAATacacatgggagagagagagagacaatggatgtgtcccaaattgcaccctattccctatatagtgcactacttttgaccagagctctatggacccttgtcaaaagtagtgccttaCGTAGCCTGTCTTTTTGGGTGCACGACAGTTATTTTACACAGGCTCAGTTGTCCTGATGTGTTTTGTCAACAGCTGTACAAGACAAAAGGGGAACCGAAGAGCCACCCTGAACAGGATACTCTGCCTACCAAACGTCTCAGAGAGACTCGTATTTCACAGGATGCTGAGTGTGAGGTTCCATCCACTTCCCCACCCAAGGAGGCCCTGACAACCACACTGGCCCCTGCTCCCCAGGAGTCCCAGTCCCGTAAACGCCCTCTCATAGTCAGGGTTGTTGCATCCCCACACCTACCAGTGAAGCACCACAGGCTAATATGAGCGTTAGCTCTGGGTTGTTGTGAACTAACACCTGGCTACTAAGTAGATGTGCTTTTCAGGAAGCCAAGGCACATAGGCTTTTCTGGGACCATTCCCATTTGACATCTTTCTGCAGTGGAGCATTTCAAAAGGTGTGTGATATATCCATTCGAATGTCCTTAACTATAGGCTTAACTATGGTAGTTAGATTTGGAATGAATTTGCCATAATAGTTAAGGAAGGAAAGGTAAGACCTGAACTCAGTGGTGTTTCTAGGAATGGGAGCCTTCTCAATAGCTTCAGTTTTCTGTTTCATGGGGTGTATCCCCTCTGCATCTATCACATGACCTAAATAGGCTATGCTGTTCTGGAAGAAAGAACATCTCTCTTTTAACTTTCAGATTGCAGACTTTGTCTTTTTGGGACTTCTTCAAGATTTCGCATGTGTCACGCATATCATCAATATAACAGATTACCCCTTCTTACCCCTTGTAGGATCTGAACCATCATTTTCTGAAAAATATGACGCACAGGCAACACCATAAGGAAGCCTGTTGACCTTAAAACAACCCCTTATGTGTATTCATGGTGAGATAGTGCTTAGACCGCTCCTCTAACTGTACTTGCTCGTATGCCTGTGACAAATCCAGCTTTGTTAACGTCTCACCCCCGGTCAGCTTTTTGAACAAGTCCTGTGTTTTTGGTAAGGGATACTGATCTACTTCCAGCCACGGATTGATAGTTACCTTGTAATCTCCACATATTCTTACagtactgtctgttttcaggatACACACAATTGGAGCAGCCCATTGACTGTAGTTGGAGGAAGGACCCCTTCTAACTCCAACGTAACTAGCTGTTTTTCAACCGCTTCTCTAAGTGCATACGTACTGGGCAAGGACTGCAGAACTTATGTGCAGCCCTATTAGTTACATGTAGCTTGGCTGTGATACCTTTTAGCATCCCTAGCTCTGGCTGAAACAAATATTTTTCACACAaaccatctactgtctctacagcTGTTACTGTGTACATGTGACCAGTCTAGCTTCAACTGACTGATCCAGTCTCTACCCAGCAGGGCAGGACCATTTCCTTCTACCACCATCAAGTTTCAAAAAGTTGTACTCCCATTACACTTGACTGAGATTTTCCCACTTAGAACTAATTACTGTATGTTTTTAACACCCAGTTTGCAGGGCTCAATTTTACCCTTTTGAACTTGCGGGTGTACAACCTCTCTGATAGCAAACTGCTGCACCTGTATCAACTTTCATGTTGAGTCTCACATCATCTATCCTTACATACAAAGTCTTTACGTCTACTGCAAACAGTTCAGTTCCTTTTACGTTACCCAACTCATAGTCAGTGGTGAAAACGGCTGAGGTCCCTTTATCAGAGTTCTCACTCTCATTTGAGATGTAATGTTCCAAACTCTGGCACTTGAGTGCGATGCAATGCTCCTGTGTTGAAATGACGTtcttgtcctctctctcgctGGTGTGCGTTGCCCTGATCATCGTTGCTCCACTCGTCTTTTGCCTCGTTTAATTGTTTCCCACATGACGCGAGCGGCAAGTCATGGCTACGTGTCCTTTCTTCTTGCACTCCAGAAGCTCAAAATCCACGTAGCGCCACTCATCTGGCTTGTGCCCTTTTCCCACACAACGGTAACATGGTTTACAGGTTGCCTCCGTTTTCTTGGCAACGCTTTTCTTCTCAACTGCATTTGCTTTGAAAGTATTTTGTGAAGACTGCAGTGTGCTTTTCCTTGTTACTTCAAAAGAAAATCCCATATCCACAGCCAGTGCTAATGTTAAATCTTGTGTGAGCTACATTCAGTAAACGGTCTCTCAGCGGTCTTTTAACGCCACACACAAATATCACGTACTGACAGACTGAATTTTCTTAAACTAGCGAAATACTCAATCGACTCTCCCTCGAGTTGACTCCTTGCATGATACTTACATCTTTCAGCAATACAATTTGTCATCGGTATGTAGTGACCTTTCAACAGCGCAACCAACTGTCAACGTTGTTTCACTTGGTTTCTGTGGCGCATTGAAGTcctgtaatgacctgactagatcataaaggaacaattgtccagacagaggctTGAG

Function

NR:

description
uncharacterized protein LOC110515047

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965548.1 True 4633 mRNA 0.46 2 1906137 1910903

Neighbor

gene id symbol gene type direction distance location
LOC118944751 LOC106595628 coding downstream 150342 1750419 ~ 1755795 (-)
LOC118944740 LOC106595845 coding downstream 155875 1739961 ~ 1750262 (-)
LOC110519742 LOC106595845 coding downstream 232554 1661660 ~ 1673583 (-)
LOC118944737 NA coding downstream 296539 1607041 ~ 1609598 (-)
LOC118944735 LOC106595845 coding downstream 312522 1583116 ~ 1593615 (-)
LOC110516567 LOC106595628 coding upstream 5668 1916571 ~ 1953363 (-)
LOC118944769 NA coding upstream 263355 2174258 ~ 2190541 (-)
LOC118936266 twist1 coding upstream 282894 2193797 ~ 2195426 (-)
LOC118944471 LOC106573719 coding upstream 314915 2225818 ~ 2229438 (-)
LOC110506602 LOC106595809 coding upstream 332584 2243487 ~ 2249509 (-)
G215973 NA non-coding downstream 91350 1790947 ~ 1814787 (-)
G215972 NA non-coding downstream 100114 1775000 ~ 1806023 (-)
G215954 NA non-coding downstream 186178 1645154 ~ 1719959 (-)
G215963 LOC100136727 non-coding downstream 189349 1690406 ~ 1716788 (-)
G215985 NA non-coding upstream 30325 1941228 ~ 1941675 (-)
G216026 NA non-coding upstream 114824 2025727 ~ 2025938 (-)
G216027 NA non-coding upstream 115344 2026247 ~ 2026792 (-)
G216029 NA non-coding upstream 121632 2032535 ~ 2032988 (-)
G216031 NA non-coding upstream 124473 2035376 ~ 2035667 (-)
G215956 NA other downstream 224115 1659080 ~ 1682022 (-)
G215950 NA other downstream 287997 1600226 ~ 1618140 (-)
G215354 NA other downstream 986464 915959 ~ 919673 (-)
G214982 NA other downstream 1424528 481047 ~ 481609 (-)
G216038 NA other upstream 147012 2057915 ~ 2058429 (-)
G216066 NA other upstream 210300 2121203 ~ 2121857 (-)
G216059 NA other upstream 213273 2124176 ~ 2125352 (-)
G216811 NA other upstream 825958 2736861 ~ 2738467 (-)

Expression


Co-expression Network