ahr1a (LOC106605709)


Basic Information

Item Value
gene id ahr1a
gene name LOC106605709
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1960781 ~ 1987480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965551.1
GGGATAAGCGTGTGCGTACCCGGTGGGTGGAGCTAAAGGGGGTGTGAAAGAAATGACCACAAATGTCCAATTTCGGCAGTTTGCATGACGTTTGTTGTAGCTATGAAATTCTCGCGTGGCTAATGTTCGGGGAATATATTCCGATTTGATTTATAGTCCATCCGCGTTTGGCAAGGAAGCTCGCAACGGCTCAGTGTTGGCAATTTATCATCTTTCTCTTCTTTGAACTTTTCCACTTTCTCTAGCTAAATTAGGTTGTTAATATATGTAGCAAACATCTCTTTCTTTTCGCTTAATAATGCAGGTATGCATTTAACTGGCTATATCGTTTTGTAGTATGCATGAAAATGCATCTTACTGACCATGTTTTGGTTTGAttgtcagctagctaacatgatGCATGTTATTTAGCTAGCCTAGCAGAAGCAGGGATTTGACTGCGTACCCTGTCCTGTCAGCTAGCTAGTTGTCTTTCTAGTGCGCTTGGCATTCCATAGTACACATTGGAAAAAATAGCACCAACATGTATGCAAGTCGCAAGAGGAAAAAGCCCCAGAGAAGTGTGAAGCCACCTCCAGAAGGAGCCAAATCAAACCCTTCCAAGAGGCACCGGGAACGCCTGAATGGGGAGTTGGACAGGCTGGCCAGTCTGCTTCCTTACCCCCAGGATGTCATCTCCAAGCTGGACAAACTGACCATCCTCAGGCTTTGTGTCAGCTACCTGCGTGCCAAGAGCTTCTTCAATGTGACCCTACAATCCACAGCCTCCCAGCGCCCAGAGAGTAATGTTCTGAAGAAGAAAGAACTTCACGTTCCAGAGGGAGAGCTCttactacagGTGTTGAATGGCTTTGTTCTGGTTATCACGGCTGGTGGCACAATCTTCTATGCATCCTCCACCATCCAGGACTACCTGGGCTTTCACCAGTCAGACGTCGTCCATCAGAGTGTTTATGACGTCATTCATATGGAGGACCGAGCAGAGTTACAGAGACAGCTCCACTGGGCCCTGAACACCCCTAACACCGGACAGCTGGTCTCAGATTCAGCCTCGCCACAGGCTGTCACAGCCTACAAGCCAGAGGCACTCCCACCAGAGAATTCCACCTTCCTGGAACGCAACTTTGTCTGCAGGTTAAGATGTCTCCTGGACAACTCCACTGGCTTCCTAGCCCTGAACATCCAGGGGCGTCTAAAGTTCCTCCATGGCCAGAGCGATAGGACAAAGGAGGGCAAGGCCATCCCGCCTCAGCTGGCTCTGTTCGCCCTGGCCTCTCCCTTACAGCCCCCCACCATCCTGGAGATCCGCACCAAGAACTTCATCTTCAAGACCAAGCACAAGCTGGACTTCACCCCCATTGCCTGCGACGCCAAAGGGAAGATGGTGCTGGGTTACACTGAGGCTGAGCTGTGCAACCATGGCTCAGGATACCAGTTCATCCATGCTGCTGACATGCTGCACTGTGCTGAGAACCACATGAGGATGATAAAGACCGGAGAGAGTGGGATGACAGTATTCAGGCTGCTGACCAAGCTGACAGGCTGGGTGTGGGTGCAGGCTAACGCCAGACTGGTCTACAAGAACGGACGGCCTCAGTGTATCATCGCATCCCAAAGAGTCCTCACTGATGAAGAGGGAGAGGACAACCTAAGGAAGCGGAGCCTCCAGCTGCCTTTCAGTTACACCACTGGGGAGGCTCTTCTCTACAACACCAGCTTCCCCAAGACTCTGGTAACAGGGGACTCCTTAGCAGGCGACACCACCAGCCCTGCAGGAAATATCACCAACAACAACCAGGATGGAACCCTGGACCCTGACTCACTGCTGGGCTCTCTGCTGAAACAGGACAAGTCCATCTACTGCTGCTCCCCTCACACTCAGAACGAGCTCCAACTCCCTCTCCAACTCCAGGAGGAGGTGGCAGGGGTTCCACAGGGGGATTGTGGGGGCATCTTCTCCAGCAGCTGGCAGGAGGGCAGCATCCGCTCTCTGTCGGAGAGTGTCCTCTTCAAGCAGGAGCCGTTGGGGGTCGGGGGTGGCGGGGGGATGGACGGCTTCTCATCGGAGGACAGAGACAGGGATTTGTGGAGCTTCATGATGAACCTGGGCATCAGTAGGGAGGATCTGGAGCTGTTCCAGCAGGATGAGATGTTCCTTGATGTGGATCTGGACACTGGCCGAGACGACCTCCTTCCTGACCTGACAGACGAGATTCTCTCCTACGTACAGGAGTCTCTGAGGAAGAGGTCGGACTGGGGTCAGACTGTATTCTCTTGCAGGGGGGCTAAGTTAGGGGAACAGGACTATAGCTGCCCTACCACGCTGTTACACCAACCATCTATGGAACAATCACAAACCCCACatctacattctactacagttcCGTTACACCAACCATCAACCTCACGACCACATTCTTCTACAGTGCCTCAGTGTCAGTcacagatacagccaccacaGCTGCCTGTAGTCCATCCCCTATCAGTTCACCACTATCGGCCTCCTCCCCACTACCCACAGCAGCCAATACCGCAGCAGTGTTTACACACACAGCCCCACCCACAGGCaacacagcagcagcaacagagcCATCTAAATGGACAGGTATTGCCAaaccaacagcagcagcagctgtgtaACAGACTGAAGCACATGCAGGTGACTGGGACGGGTTCAATAACACAAAGACAGAACGACATCaccaagcagcagcagcagattcCTCCATTGTTCAATGTGGAGCAGCCAGGGGGGCTCCAGACTCACCACGGCCACCCCCAGCATGGGCACCTCTGCCTGGGGGAAGCTTCCCTGGGCCTCCCCTACAGGAACCAGCTGAACACTTTGTCTGTTAGCAGCTCTTCAGTGCTCTCCTCCTATGTACCCACCACGGGCCTCCAGAGCCAGGGGGTGGACGGAGACCTCATGCCCCAGAATTTTGAGGAGTTGCTGGGCAGCCTGGAGTCCAGTGGTCCCCGAGGGACAGAGGATGGTAGGGGAGCGCTCcagtggagtgtggtggaggcCCTGGGTGTGTTCCAGCAGCAGAGGCACCTCCCTGACGGCCTGGCTCAGTCTCAGGCCACCAGCCAGGGCTGCGCTCAGCATGCCTATCCCCTGGCTATGGGGCTCAGCCAGGTCAATAGAGCAGAGTGGCCATTCACCACACAGTTCCAGAACGGGAGCCTGAAGGAGGCTGGTCCAGCCCCTGGCCCTGTACCCAACCCTGGGTCCTCCAGGGGGGCAGACCATGGACATGCAGCAGCGAAGCAGCCAATTCACcagccccctcctccctctgctgaCCTCCCTCTGAGTGGATTTATGTGAGACTGAAGGCCCTCCTCCCTGGAGGCTCCAGAGCCAGACATTCCAAGGCCAGCCAGCTGCCCCGGTCCCCCGGAGGGAGCAGAGCCCTGACTGACGACAGCGCCACACAACAGAGGCTAGAGGGATAAGGATCCTCCTGTCTGGCACCCAGCTGCACATGGCTCCCCTGCGACCACTGACTGTTTCCCAAAtcggcccttgtcaaaagtagtgcactatataggggatagggtgcaatttgggctGCTGTCTTAAACAGGAACCAGGGCATGTCTGGGAGTATGGAGGACTTGGACTGGAGGGGTCCCGTGTGGATCATTTTGTTAGAGCTTGGCACTTGCAACGccggggttgtgggtttgattcccatgggggaccagtatgaaaatgtatgcactcacaacTATAAGTCGCTCTGGATCAGAGCATTTGCTAAAATAATCGAATGTAAAAGTGAGATTCAGATCCAGAGAGACGTGTCTGAACGTCAGACAGCAGGCAGAGGGACAGTCCGAGACAGAGAGATTGtgacagacagacggagggagaccagaggaagtggataatcaatcaaatttatttatatagcccttcttacatcagctgat
>TU245816
ACGTTTGTTGTAGCTATGAAATTCTCGCGTGGCTAATGTTCGGGGAATATATTCCGATTTGATTTATAGTCCATCCGCGTTTGGCAAGGAAGCTCGCAACGGCTCAGTGTTGGCAATTTATCATCTTTCTCTTCTTTGAACTTTTCCACTTTCTCTAGCTAAATTAGGTTGTTAATATATGTAGCAAACATCTCTTTCTTTTCGCTTAATAATGCAGGTATGCATTTAACTGGCTATATCGTTTTGTAGTATGCATGAAAATGCATCTTACTGACCATGTTTTGGTTTGAttgtcagctagctaacatgatGCATGTTATTTAGCTAGCCTAGCAGAAGCAGGGATTTGACTGCGTACCCTGTCCTGTCAGCTAGCTAGTTGTCTTTCTAGTGCGCTTGGCATTCCATAGTACACATTGGAAAAAATAGCACCAACATGTATGCAAGTCGCAAGAGGAAAAAGCCCCAGAGAAGTGTGAAGCCACCTCCAGAAGGAGCCAAATCAAACCCTTCCAAGAGGCACCGGGAACGCCTGAATGGGGAGTTGGACAGGCTGGCCAGTCTGCTTCCTTACCCCCAGGATGTCATCTCCAAGCTGGACAAACTGACCATCCTCAGGCTTTGTGTCAGCTACCTGCGTGCCAAGAGCTTCTTCAATGTGACCCTACAATCCACAGCCTCCCAGCGCCCAGAGAGTAATGTTCTGAAGAAGAAAGAACTTCACGTTCCAG
>TU245815
GACGGCTTCTCATCGGAGGACAGAGACAGGGATTTGTGGAGCTTCATGATGAACCTGGGCATCAGTAGGGAGGATCTGGAGCTGTTCCAGCAGGATGAGATGTTCCTTGATGTGGATCTGGACACTGGCCGAGACGACCTCCTTCCTGACCTGACAGACGAGATTCTCTCCTACGTACAGGAGTCTCTGAGGAAGAGGTCGGACTGGGGTCAGACTGTATTCTCTTGCAGGGGGGCTAAGTTAGGGGAACAGGACTATAGCTGCCCTACCACGCTGTTACACCAACCATCTATGGAACAATCACAAACCCCACatctacattctactacagttcCGTTACACCAACCATCAACCTCACGACCACATTCTTCTACAGTGCCTCAGTGTCAGTcacagatacagccaccacaGCTGCCTGTAGTCCATCCCCTATCAGTTCACCACTATCGGCCTCCTCCCCACTACCCACAGCAGCCAATACCGCAGCAGTGTTTACACACACAGCCCCACCCACAGGCaacacagcagcagcaacagagcCATCTAAATGGACAGGTATTGCCAaaccaacagcagcagcagctgtgtaACAGACTGAAGCACATGCAGGTGACTGGGACGGGTTCAATAACACAAAGACAGAACGACATCaccaagcagcagcagcagattcCTCCATTGTTCAATGTGGAGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965551.1 False 3939 mRNA 0.54 12 1960781 1987480
TU245816 False 731 TUCP 0.45 3 1960868 1966052
TU245815 True 695 TUCP 0.52 2 1984983 1985796

Neighbor

gene id symbol gene type direction distance location
LOC118944758 LOC100136727 coding upstream 75875 1882585 ~ 1884906 (+)
LOC118944757 LOC100136727 coding upstream 82697 1875760 ~ 1878084 (+)
LOC118944756 LOC100136727 coding upstream 97555 1860933 ~ 1863226 (+)
LOC118944761 LOC100136727 coding upstream 133282 1819422 ~ 1827499 (+)
LOC118944763 NA coding upstream 141093 1813134 ~ 1819688 (+)
LOC110513668 LOC106595161 coding downstream 22797 2010277 ~ 2123904 (+)
abcb5 LOC106574003 coding downstream 271071 2258551 ~ 2284314 (+)
LOC118944474 NA coding downstream 426991 2414471 ~ 2419132 (+)
fhod3b fhod3 coding downstream 618543 2606023 ~ 2853339 (+)
LOC110517892 LOC106606083 coding downstream 883932 2871412 ~ 2883602 (+)
G215828 NA non-coding upstream 278751 1659224 ~ 1682030 (+)
G215815 NA non-coding upstream 291203 1589307 ~ 1669578 (+)
G215792 NA non-coding upstream 383751 1489352 ~ 1577030 (+)
G215894 NA non-coding downstream 26387 2013867 ~ 2014326 (+)
G215900 NA non-coding downstream 35605 2023085 ~ 2023300 (+)
G215904 NA non-coding downstream 43280 2030760 ~ 2030962 (+)
G215906 NA non-coding downstream 44670 2032150 ~ 2032404 (+)
G215910 NA non-coding downstream 50420 2037900 ~ 2038204 (+)
G215843 LOC100136727 other upstream 155526 1804388 ~ 1805255 (+)
G215830 NA other upstream 213499 1670411 ~ 1747282 (+)
LOC118944469 LOC100136727 other upstream 280674 1635598 ~ 1680107 (+)
G215820 LOC100136727 other upstream 344402 1609638 ~ 1616379 (+)
G216353 NA other downstream 473737 2461217 ~ 2462744 (+)
G216438 NA other downstream 584915 2572395 ~ 2574899 (+)
LOC110506718 LOC102207154 other downstream 1029684 3017105 ~ 3022686 (+)
G216640 LOC106606088 other downstream 1052506 3039986 ~ 3041517 (+)
G216673 NA other downstream 1118874 3106354 ~ 3108233 (+)
G215795 NA non-coding upstream 466309 1491937 ~ 1494559 (+)

Expression


Co-expression Network