LOC118944769


Basic Information

Item Value
gene id LOC118944769
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2174258 ~ 2190541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040067.1
AAAGAAAAGTTCCAAAACGCAAAATAGAGTTATGTGCAAACTAAAAACCCGAATGCAAAAGATAAACCTAGTCCTTAGCCTACCTAAGAACACAACTTGCTTATATGAACATCCAAGCTGTTCCCGTTGACAAGCAAAATAGCTTAATTTGAAGTCAACAAACTCTCTCCAACTCAGAAATGTAATACAACTAAGAGCAAGTATACGTTCCTGTGTTTGCGGAGAGGAGTTGGTAACGGACACGACGCAGAGAGAGGCACCGAATGAAACCTATTCTGAACAGATGTTAGTATTTTACAAAAGTCACGTGAAATGAACAGATGTTGTTGTAGAACAGGGACTCGCCTTGGTTCGAGAGCATTCCTCGACAGAAAGGCTTCGAAATAAGATCGGAGAGAAGCATTAGCGTTCTATTCACAACAAAAAACGACTCAGCACATCGTGTGGGTGATAATAGATTACCACGGGCCTCACCTGCGATGGAACCTCCGCCTACGTCCCATAGGAAATCTATCAAACTAAAATGGACGGTTCCAACCGCGCAGGAATTTGCTGGAGATGGGGGGGCGTTTGTGAAGCAGGTCGTCAACAGGCTGACTCATCACATATGGCCCCAGAACCGTGTCCCTCTGCCAAGATGACACTGCACAGGATATAGTCCTCATCATCAGCCACCTGGTCAGGTGAccctgacaacaacaacaacaacaacaacaaggaacAAACAAAAGTTGATTGGATGGTGTAAGAGATGATCCTGACTGCAAGTTTCCATTGTGGTCCGACTGAATCTACCAATGGATATCCTGGTGCATCTGCTTCTGGACTGAACAGGGCTGGAGAGGACCACAGTTCCTCTCAACAAATAGGCCCACATCAAATGAACTTCTCCAGATGAGACCGTGTGGAATACTGATGTGATACTCATACATGCAAAATGCTACTACAGGATAGAATAGCATGGAGAACTGTATGACACAAACAACAGTCATACTGAAGCTAACATGGACAAGTTTGCAAAGATGCAATATTTAGGAATTGATACTGACAAAATAGTGGGTGGATGATCACTAGTTACAATAGGGAAATTGCACACACTTTCTTTTTAGGATTATATTTATAGATGTTATGTTTTACAAGTATTTTTTTGATTATGGTATAACTTATAAATACCCATTTTTGcttttcttttatttatttagagAACATGTATGTTGGCACATTTTatttattatataaatatatttaatatttggtGCTTGATGAGAAGTTATCTTCAAAAAGTTTTGTAACAAGATTTGGTTTTATGATACTAAAGACATGGAAGGCTGTTTTAACTACTGAACTATGTACGATGACCCGACTGTATCTAACTGTATCATCTATATTAGATTGAGATGTTTGTGAAACTAATCCGGGGGGTCACAGAAGTTGAGAGTTGAAAGTGTTCAGTCTCGTTAAACAACCCAAAACCTCTTAGACATAATACCACAGTGTCATGTGTCTGTACCCTGATCCCTGCAGGAAACCCATCtgcctctcaaatggcaccctattccctatatagtgcactacatgcatattccctatgtagtggcccatagggttctggtccaaatagtgcactatatagggaatagggtgccatttaggacgctgGCCCGTTCCGAGGACCCTGGTATCTCCCTGCTTTAACGATGCAGGACGATGTAAAGCTTGACTTATCTCCCTCCCCAATCACCGTGTCACCAGGGTGCTGGCTCCGTCCTGCTGGAGGGAACAGCCTTGCTGTTTGTGACCTGTGTGATAAATCAAGTTCAAAGCAGAGGGTTGCACGCTGACAGATATCACCTTACACCCTGACAGATATCACCTTACACCCTGACAGATATCACCTTACACCCTGGCCCAGTTCACTTGTCTTATTATTACATCTTGGCTGTTTGCATTTGCTAGTCTCATACCTGTCATGGATAGCGTTCATTATTCAAATGTGTTGAGGCAACATCACacatagaaccccccccccccccccccaccccatctaCCACCATTCCAGTAAATTACTGAAATCAGATTAGAGAAATGTCATATGAAACACTAACCAACAAGAgtttgtgtgcatcccaaatggaaacctatttcctttatagtgcactacttttgaccagaacccaatGGGTCCTAGGCccttggtctaaagtaatgcagtatatagggaatagggtgccatttgggaaacagacTTAGATTCCTGAGGAGTGAGTCCACGTGACATGAAGCCACACTTGGATAAACAGTTTCACCCTTCCCTTATGAATTCTGCTGACCTTGGTGTCACCGTGGATGAATGTTTTACGAAGGTCTGGAGCTCCAACGGAGGCTAGAGGAGTAGCAATAAGATCTATTAAACATTCTGGTACTGTAGGACTGAAATAATACCTGTTTTACACATTACACTCTACACTGGCAGTATACAGTGTAAATATTCAGTTTGCGGAATATTTAAATAAAGCCTggaataaaattttaaaaaggcCACCTATAATTAAATTGTAACCCCAAAAAGA
>TU246157
TTTACAAAAGTCACGTGAAATGAACAGATGTTGTTGTAGAACAGGGACTCGCCTTGGTTCGAGAGCATTCCTCGACAGAAAGGCTTCGAAATAAGATCGGAGAGAAGCATTAGCGTTCTATTCACAACAAAAAACGACTCAGCACATCGTGTGGGTGATAATAGATTACCACGGGCCTCACCTGCGATGGAAATCTATCAAACTAAAATGGACGGTTCCAACCGCGCAGGAATTTGCTGGAGATGGGGGGGCGTTTGTGAAGCAGGTCGTCAACAGGCTGACTCATCACATATGGCCCCAGAACCGTGTCCCTCTGCCAAGATGACACTGCACAGGATATAGTCCTCATCATCAGCCACCTGGTCAGGTGAccctgacaacaacaacaacaacaacaacaaggaacAAACAAAAGTTGATTGGATGGTGTAAGAGATGATCCTGACTGCAAGTTTCCATTGTGGTCCGACTGAATCTACCAATGGATATCCTGGTGCATCTGCTTCTGGACTGAACAGGGCTGGAGAGGACCACAGTTCCTCTCAACAAATAGGCCCACATCAAATGAACTTCTCCAGATGAGACCGTGTGGAATACTGATGTGATACTCATACATGCAAAATGCTACTACAGGATAGAATAGCATGGAGAACTGTATGACACAAACAACAGTCATACTGAAGCTAACATGGACAAGTTTGCAAAGATGCAATATTTAGGAATTGATACTGACAAAATAGTGGGTGGATGATCACTAGTTACAATAGGGAAATTGCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040067.1 False 2570 mRNA 0.42 2 2174258 2190541
TU246157 True 779 lncRNA 0.45 3 2175733 2190248

Neighbor

gene id symbol gene type direction distance location
LOC110516567 LOC106595628 coding downstream 220895 1916571 ~ 1953363 (-)
LOC110515047 LOC106595845 coding downstream 263355 1906137 ~ 1910903 (-)
LOC118944751 LOC106595628 coding downstream 418463 1750419 ~ 1755795 (-)
LOC118944740 LOC106595845 coding downstream 423996 1739961 ~ 1750262 (-)
LOC110519742 LOC106595845 coding downstream 500675 1661660 ~ 1673583 (-)
LOC118936266 twist1 coding upstream 3256 2193797 ~ 2195426 (-)
LOC118944471 LOC106573719 coding upstream 35277 2225818 ~ 2229438 (-)
LOC110506602 LOC106595809 coding upstream 52946 2243487 ~ 2249509 (-)
sp8b LOC106573674 coding upstream 95753 2286294 ~ 2292006 (-)
LOC118944775 NA coding upstream 163742 2354283 ~ 2388299 (-)
G216150 NA non-coding downstream 9064 2163685 ~ 2165194 (-)
G216076 NA non-coding downstream 37779 2136252 ~ 2136479 (-)
G216049 NA non-coding downstream 77392 2093278 ~ 2096866 (-)
G216033 NA non-coding downstream 135286 2038723 ~ 2038972 (-)
G216031 NA non-coding downstream 138591 2035376 ~ 2035667 (-)
G216184 NA non-coding upstream 44201 2234742 ~ 2235806 (-)
G216186 NA non-coding upstream 46588 2237129 ~ 2237700 (-)
G216185 NA non-coding upstream 48130 2238671 ~ 2239438 (-)
G216187 NA non-coding upstream 50299 2240840 ~ 2241669 (-)
G216188 NA non-coding upstream 51189 2241730 ~ 2242295 (-)
G216059 NA other downstream 48906 2124176 ~ 2125352 (-)
G216066 NA other downstream 52401 2121203 ~ 2121857 (-)
G216038 NA other downstream 115829 2057915 ~ 2058429 (-)
G215956 NA other downstream 492236 1659080 ~ 1682022 (-)
G216811 NA other upstream 546320 2736861 ~ 2738467 (-)
G216902 LOC106606079 other upstream 855464 3046005 ~ 3059744 (-)
G217261 NA other upstream 1147645 3338186 ~ 3338580 (-)
G217459 NA other upstream 1495861 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 2248555 4439096 ~ 4440437 (-)

Expression


Co-expression Network