LOC118936266 (twist1)


Basic Information

Item Value
gene id LOC118936266
gene name twist1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2193797 ~ 2195426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581645.2
AACTTTCTCAAGTATCAGAAAACATTTCTTGTCTCGGGATCCCATGTATGGATACTTTATTATTGGTGTCTTCAAAGGCGGTGAATCGAAGGCGCAACTGGAAATAACCGTTAACTTGATGCGTGGATCATTCGGACTGACTGTCGCTTGTCTGTCTTCTAACTGAGGGGTGATGTCTGAGGAAATGACCGGGGAAGAGTCGAGCTCCCCAGGCTCTCCACTAGACAGTCTCGGCAACAGTGAAGGGGAACTGGATAGGCAACCGAAGAGATGTGGGAGGAAAAGGACATCAAGCAGGAAAAACGGGGAGGATTCAGATAGCCCTACCCCTGGGAAAAGAGGGAAAAAGTCAAGCAGCAGCAGTCCACATTCTTTCGAAGACCTACAGACGCAACGAGTCATGGCGAACGTGCGCGAGCGGCAGAGGACGCAGTCACTCAACGAAGCTTTCTCGTCTTTGCGGAAAATCATCCCCACTTTGCCTTCAGACAAACTGAGCAAAATACAAACCTTAAAACTTGCTGCCAGGTACATCGATTTCCTGTACCAAGTTCTGCAGAGCGATGAATTGGACTCCAAAATGGCAAGTTGTAGTTATGTGGCTCATGAGAGATTAAGCTATGCGTTTTCTGTGTGGAGGATGGAGGGCGCTTGGTCCATGTCAGCATCTCACTAGCTCACGGCCGAAGAGCTGTAGTCCAAAATGGTGACAGCTGATTCTGCTTATCAGTATGACAACGGGGCAATTCTGGAGAATAATGCTGGAAACACACAAAGCTGCGGTTTATGGGAGCAAACTTTGACAACCATTTAAAACCAAAAAGGACAGGGCGTGGGGAGAGCACTTTGCCTGGGAAAGGCCCGCGTTTGGACGAGCTGGATCTGCATTCGAGTGCTAggctactacactactacattcTGAAATACgttagtttttttttattgttgacGACGAATGTTACTTGGAAATGTATGTTTTCATGCATGTCTTTGACTCTGTGGACAGTATTCTGTGGAGGTTAAAGGGCAGCATCGACGCATTTGTCTCAGTTTCCGTGTGAGACTTTCGATGTGGACTGACTGCGGTATTATAGGCTAATGGGTTGAAATAATGTGTCGCCAACCTGTGCAAAAATAATTGAGGTTATTCTTTTCagaatacatttatttatttattgatgaCACGTGTTACATGAGGAATAGATCTTATGTCTGAAATGCATTCCTATTTTTATTATTGTTGTGTAAATAATTGTATATTTTCCGCAATAAAGTAAATGATAAAACAAAACAA

Function

symbol description
twist1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific; E-box binding activity; and bHLH transcription factor binding activity. Involved in several processes, including animal organ development; regulation of cellular response to stress; and regulation of gene expression. Located in nucleus. Implicated in Saethre-Chotzen syndrome; Sweeney-Cox syndrome; acrocephalosyndactylia; and craniosynostosis. Biomarker of pulmonary fibrosis.

NR:

description
PREDICTED: twist-related protein 2 isoform X2

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09069 TWIST; twist

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581645.2 True 1294 mRNA 0.44 2 2193797 2195426

Neighbor

gene id symbol gene type direction distance location
LOC118944769 NA coding downstream 3256 2174258 ~ 2190541 (-)
LOC110516567 LOC106595628 coding downstream 240434 1916571 ~ 1953363 (-)
LOC110515047 LOC106595845 coding downstream 282894 1906137 ~ 1910903 (-)
LOC118944751 LOC106595628 coding downstream 438002 1750419 ~ 1755795 (-)
LOC118944740 LOC106595845 coding downstream 443535 1739961 ~ 1750262 (-)
LOC118944471 LOC106573719 coding upstream 30392 2225818 ~ 2229438 (-)
LOC110506602 LOC106595809 coding upstream 48061 2243487 ~ 2249509 (-)
sp8b LOC106573674 coding upstream 90868 2286294 ~ 2292006 (-)
LOC118944775 NA coding upstream 158857 2354283 ~ 2388299 (-)
LOC118944776 LOC105018831 coding upstream 265737 2461163 ~ 2521910 (-)
G216150 NA non-coding downstream 28603 2163685 ~ 2165194 (-)
G216076 NA non-coding downstream 57318 2136252 ~ 2136479 (-)
G216049 NA non-coding downstream 96931 2093278 ~ 2096866 (-)
G216033 NA non-coding downstream 154825 2038723 ~ 2038972 (-)
G216184 NA non-coding upstream 39316 2234742 ~ 2235806 (-)
G216186 NA non-coding upstream 41703 2237129 ~ 2237700 (-)
G216185 NA non-coding upstream 43245 2238671 ~ 2239438 (-)
G216187 NA non-coding upstream 45414 2240840 ~ 2241669 (-)
G216188 NA non-coding upstream 46304 2241730 ~ 2242295 (-)
G216059 NA other downstream 68445 2124176 ~ 2125352 (-)
G216066 NA other downstream 71940 2121203 ~ 2121857 (-)
G216038 NA other downstream 135368 2057915 ~ 2058429 (-)
LOC110519742 LOC106595845 other downstream 530730 1661660 ~ 1673583 (-)
G216811 NA other upstream 541435 2736861 ~ 2738467 (-)
G216902 LOC106606079 other upstream 850579 3046005 ~ 3059744 (-)
G217261 NA other upstream 1142760 3338186 ~ 3338580 (-)
G217459 NA other upstream 1490976 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 2243670 4439096 ~ 4440437 (-)

Expression


Co-expression Network