LOC118944471 (LOC106573719)


Basic Information

Item Value
gene id LOC118944471
gene name LOC106573719
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2225818 ~ 2229438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964001.1
ACTGGCGAGAATGACGCGTGTCTGTCTTACAGTAGATCAAACACGCATACTAGAAGTCCACAGAGCTGTCCAGAGCAAATCCTGATAAATCCATGTAGTCTATGACAAGATATGATTTAGAATACCTTATAAAGTCTAACAGTGGAGTATTTTTCAGAGGGAACGTGTAAGTAGCCCTTACATGGTGGATCACTTGGTGGTTACTGGATAGAAAACGTTCCCTCGCGCAAAAGTCCACCTGCGTAATTTTGATTAATGGATTAATGCTTTTAGCGCAAAAGTCAATACTCGCTGCTTTTTGGGTGGTTCGAGGGGGTGACCACCACCACCTCTTGAATGACCCGCTGTGAAGGAATGAGTGATGCCGGACAGATGTAACATCTGGAGTCTGGTGGTACTGTCGGTGTTGGAGATGGGGCTCGGTGCGTCCAGCATCGCCCTCGGGGTGTTCGGCATCATCCGAGTCCGGTCGGTTCACAAGCTGCAGCTGGGGGATGCCTCTCCTATATGGAGCGGAATTTGTTTTCTCATATGTGGACTATGTGGGATGGTGTGTGCAAAGAAGAGGTCAGGATTGATTATGATCCTATTTTCAGCCTGCTGTATCTGTGGGTTGATCAGTGGGATCCTAAACTTCCAGTTTGTGCGTGTGGTGGCAAAGCGTCCTGATGCCCTGCCGTCCCTCTACCTGGCCATCATGGTGCTGGCCTGCCTGGGCATCGGAGTGTCCATCCTGTTTACCTGGCTCACCTGTCGTCTGGCCAGCAGTGAACAGCAGAGGATGTACCTGGAGAGAGAGCTGTCCCTGCACCATTCCCATGAGATGAGTGAAAAGGAGTTGGCTGAGAGATCTGAGAGAGCAGCCAGCATTCCCCAGATCTCCTTCAATGGAAAGTCCTCACCTCCATTGTCATTAGGCTGAAGCCCAGCTGTGTTACTGTATTCAAAGCATCATGGAGACAATGTTGGTTCCATTCAACACCAACGATTACAGGGGACGTGATCTCTTACAATGAACTAATACACAAAGGAATCAACATACGGCAACACTATGAGAAGGCGCTGTGAGATTTGACAATCGGCTTACTAGTGACGATGTAGGCTGAATGATGCACCTGGATAGTCCCCAGACATGGATTTGGGGGACATGGAAACAGCAGGTAGAGGGGACAAAGCTATGGCACATCCAAAGGCTCAAAAAGAACAACTAAACCACTTGAGATTGTCAGTGTTGAGATGGTGAAAGACATAACTGCTTCAGGGTTTGACTGGTCATAGAGATCATGTCATACAGTGGAAGTTGCTTCCAGTACtattatttatttgaatgattatttatgtatttattatttaaatatatgtttgtttattcatAAGCATGAAAATATAAAACCATCCCATCTGTGATAGGTTTTTACAATTTAGAGCATTATAATGAATTAAAggtttaatgatggtgttggatgaCGAGTACGACGGATGATGATGAATGATGATGACTACAATGAATGATGACGACTACAatggatgatgatggtgatgacgaCTACAatggatgatgatggtgat
>XM_036964010.1
ACTGGCGAGAATGACGCGTGTCTGTCTTACAGTAGATCAAACACGCATACTAGAAGTCCACAGAGCTGTCCAGAGCAAATCCTGATAAATCCATGTAGTCTATGACAAGATATGATTTAGAATACCTTATAAAGTCTAACAGTGGAGTATTTTTCAGAGGGAACGTGTAAGTAGCCCTTACATGGTGGATCACTTGGTGGTTACTGGATAGAAAACGTTCCCTCGCGCAAAAGTCCACCTGCGTAATTTTGATTAATGGATTAATGCTTTTAGCGCAAAAGTCAATACTCGCTGCTTTTTGGGTGGTTCGAGGGGGTGACCACCACCACCTCTTGAATGACCCGCTGTGAAGGAATGAGTGATGCCGGACAGATGTAACATCTGGAGTCTGGTGGTACTGTCGGTGTTGGAGATGGGGCTCGGTGCGTCCAGCATCGCCCTCGGGGTGTTCGGCATCATCCGAGTCCGGTCGGTTCACAAGCTGCAGCTGGGGGATGCCTCTCCTATATGGAGCGGAATTTGTATGATCCTATTTTCAGCCTGCTGTATCTGTGGGTTGATCAGTGGGATCCTAAACTTCCAGTTTGTGCGTGTGGTGGCAAAGCGTCCTGATGCCCTGCCGTCCCTCTACCTGGCCATCATGGTGCTGGCCTGCCTGGGCATCGGAGTGTCCATCCTGTTTACCTGGCTCACCTGTCGTCTGGCCAGCAGTGAACAGCAGAGGATGTACCTGGAGAGAGAGCTGTCCCTGCACCATTCCCATGAGATGAGTGAAAAGGAGTTGGCTGAGAGATCTGAGAGAGCAGCCAGCATTCCCCAGATCTCCTTCAATGGAAAGTCCTCACCTCCATTGTCATTAGGCTGAAGCCCAGCTGTGTTACTGTATTCAAAGCATCATGGAGACAATGTTGGTTCCATTCAACACCAACGATTACAGGGGACGTGATCTCTTACAATGAACTAATACACAAAGGAATCAACATACGGCAACACTATGAGAAGGCGCTGTGAGATTTGACAATCGGCTTACTAGTGACGATGTAGGCTGAATGATGCACCTGGATAGTCCCCAGACATGGATTTGGGGGACATGGAAACAGCAGGTAGAGGGGACAAAGCTATGGCACATCCAAAGGCTCAAAAAGAACAACTAAACCACTTGAGATTGTCAGTGTTGAGATGGTGAAAGACATAACTGCTTCAGGGTTTGACTGGTCATAGAGATCATGTCATACAGTGGAAGTTGCTTCCAGTACtattatttatttgaatgattatttatgtatttattatttaaatatatgtttgtttattcatAAGCATGAAAATATAAAACCATCCCATCTGTGATAGGTTTTTACAATTTAGAGCATTATAATGAATTAAAggtttaatgatggtgttggatgaCGAGTACGACGGATGATGATGAATGATGATGACTACAATGAATGATGACGACTACAatggatgatgatggtgatgacgaCTACAatggatgatgatggtgat

Function

NR:

description
PREDICTED: transmembrane protein 196-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964001.1 False 1569 mRNA 0.45 4 2225818 2229438
XM_036964010.1 True 1512 mRNA 0.45 3 2225818 2229438

Neighbor

gene id symbol gene type direction distance location
LOC118936266 twist1 coding downstream 30392 2193797 ~ 2195426 (-)
LOC118944769 NA coding downstream 35277 2174258 ~ 2190541 (-)
LOC110516567 LOC106595628 coding downstream 272455 1916571 ~ 1953363 (-)
LOC110515047 LOC106595845 coding downstream 314915 1906137 ~ 1910903 (-)
LOC118944751 LOC106595628 coding downstream 470023 1750419 ~ 1755795 (-)
LOC110506602 LOC106595809 coding upstream 14049 2243487 ~ 2249509 (-)
sp8b LOC106573674 coding upstream 56856 2286294 ~ 2292006 (-)
LOC118944775 NA coding upstream 124845 2354283 ~ 2388299 (-)
LOC118944776 LOC105018831 coding upstream 231725 2461163 ~ 2521910 (-)
LOC118964348 LOC106605991 coding upstream 316796 2546234 ~ 2553372 (-)
G216150 NA non-coding downstream 60624 2163685 ~ 2165194 (-)
G216076 NA non-coding downstream 89339 2136252 ~ 2136479 (-)
G216049 NA non-coding downstream 128952 2093278 ~ 2096866 (-)
G216033 NA non-coding downstream 186846 2038723 ~ 2038972 (-)
G216184 NA non-coding upstream 5304 2234742 ~ 2235806 (-)
G216186 NA non-coding upstream 7691 2237129 ~ 2237700 (-)
G216185 NA non-coding upstream 9233 2238671 ~ 2239438 (-)
G216187 NA non-coding upstream 11402 2240840 ~ 2241669 (-)
G216188 NA non-coding upstream 12292 2241730 ~ 2242295 (-)
G216059 NA other downstream 100466 2124176 ~ 2125352 (-)
G216066 NA other downstream 103961 2121203 ~ 2121857 (-)
G216038 NA other downstream 167389 2057915 ~ 2058429 (-)
LOC110519742 LOC106595845 other downstream 562751 1661660 ~ 1673583 (-)
G216811 NA other upstream 507423 2736861 ~ 2738467 (-)
G216902 LOC106606079 other upstream 816567 3046005 ~ 3059744 (-)
G217261 NA other upstream 1108748 3338186 ~ 3338580 (-)
G217459 NA other upstream 1456964 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 2209658 4439096 ~ 4440437 (-)

Expression


Co-expression Network