sp8b (LOC106573674)


Basic Information

Item Value
gene id sp8b
gene name LOC106573674
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2286294 ~ 2292006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586374.2
TGATGACCTCACGTTAGAATGTGGCAGTGTGGTGGAACAGAGGCGCTGATTGGTCGCCCGTGTCACAGCGGTACTTCAAAGCCGGAGAGGACCTACAATTGTGGTGGAATGGGCGGAACACATCATTGTATTGCACACCTCTAAAAAAACACTGCTGTGATTCATAAATATAAAAAGATCCTCTGAGGAGGGCACTTTTTGTGATGGCAACTTCACTTCTAGGGGAGGAGCCGAGGCTAGGATCGACTCCTTTAGCCATGTTGGCTGCGACATGCAACAAGATAGGGAGTCCGAGCCCATCACCATCCTCCATTTCGGATAATTCTTCATCTTTTGGGAAAGGCTTCCACCCGTGGAAGCGAGCCACCGCCAGCAGCTGCAGCCTTGGGTCCGGCCTGTCCGGTTTTGGAGTGTCCCGTAACGGAGCTGGTCTATCGGACTCGTTTGGCACCAACAGCTCTCCCGGATCCAGTGCCTTCTCCCTAACGTCCGGCAACTCATCCACGCCCCACTTTGGAAACGACTATTCTGTATTTCAGGCCTCCGTTACAAACAGTTCTCAAGAACCCAGCCATCAGCCCGTCTTCATTTCCAAGGTGCACTCCTCAGTGGACAGTCTGCAAGGCATCTACCCGAGAATGAGCGTTGCACATCCGTACGAGTCCTGGTTCAAGTCGTCCCATCATGGTATCCCCACAGGAGAGGTTGGCACCACCGGCGCGTCTGCATGGTGGGATGTGGGAGCGGGTTGGATTGATGTTCAGAACCCGAGTGGAGCAGCTCTACAGTCCTCGTTGCACTCCGGTGGACTCCAGACATCGTTACACTCTCCTTTAGGGGGCTACAATTCCGATTACTCCAGCCTAAGTCACTCAGCCTTCAGTACAAGTCCCTCTCCACACCTTTTGACAACCGGACAACACCTGATGGACGGTTACAAGCCGGTGTTATCCTCTTATCCGGACTCCAGTCCGTCTCCATTAGGCGGAGCAGGGGGGAATATGTTATCTGGGGGGCCAACGGCCTCTCTAGCGGGGTCTCCCCGGTCCTCCGCACGGCGCTACTCTGGCAGAGCCACCTGCGACTGTCCCAACTGTCAGGAGTCGGAAAGGCTGGGGCCGGCAGGAGCAAGTCTGCGGAGGAAAGGGCTCCATAGCTGTCACATTCCGGGCTGTGGAAAGGTTTACGGCAAAACGTCGCACCTCAAGGCGCACTTGAGGTGGCACACCGGAGAGAGACCGTTTGTGTGTAACTGGCTGTTTTGCGGGAAGAGGTTTACGCGCTCTGATGAGCTCCAGCGACACTTGCGCACGCACACCGGGGAGAAAAGATTCGCCTGTCCGGTCTGCAACAAGAGGTTTATGCGGAGCGACCATCTGAGTAAACACGTAAAGACTCACAGCGCCGGGGGCTCCGCCGGGTCTGGCTCTGGCAgcgggggaaagaggggaagcgATACCGACAGTGAGCACAGTGCACCGGGGAGCCCTCGATGCCATTCCCCCGACCTGTTGCAAGCTCCCGAATCTACCCCGGGTACGGGAAACGAACGGCCTTTCTAAACTCTCTCGACTAAGTATAATATCTGAGAAAACATATGATCTAAGGGAAATGGCTAAACTACAGTGGACATACGTCGAGTATGCGTAATTATGCTAATGTGTGCAAGTTGAGTTAATCAAGTGATTTAGACTACTGATCAAATGATATCTCCTAGTATCCTATTGATGACGTGGGGTGTACAGGTCAAATACAGTACTGGTAAAGTAATCCTGAAGGCACACTGGAACACTGGGGCACAATGTAAACACATCAGTGTTCTTCTAACGCACAGACTGATCCAACCGGGGACGCCTATACTTTGGTGTATGTACCCTTTTGAGTGTTTTTACGCAACCTGGTTATTACATGGGTATTACAATAAGCAAGAAATAGACAACGTTGTTCTATCACTTGGTGATAATATGTGTCCTGCAATATCGTGTTACTGCTGTGCTGACGTACTTTTATTCAAAACCAAACTGTGGCACTTTATTAGCCTGTTGAACACTGAAATGATCAGTACTCGTCCTTTTCGACGGCTCCTTTGTAAGAACAAATCACTGTAGCTGTTTATGTGCGGTGATCCACGTTTTGTTTATGTCCTGATCTACCCTATCGAACACATCGCCTGTTTATTATTAATAATGGAGGAAAAGTTATGTCACCCGTTGGTAAAACGCTCCACGGATACTATCAGAAAGAGCCTGTCCAAGTTTGTAATGAATACCTACATTTCACGTCACTGCAAGGCTGTATATAATGAGAAATGTAATAGCCTAGAAAATTATTCCGCACCAATGTAAAGGTGAGTTATGTATTTGTCCATGAGACGATTTTGTATAGTCATTTCTAGTTGTACATTTGGCTCTAGTAAATATCTGAACATGTACGGAAGTGTATTTTGacattattgttttattttgttttgtttgtttgtcaggaTATAAAAAATGTTATTGTGGGGAGTTATATTTAACCACGAGTTTTACTTGTATTTCTGAGTCTTTTAATAGACGCACTTTGAATTTATTTGTAAGAAGATTTCGAAATCATTCACTGTTTATTATTCTCATCTTTTAATTTAAGTAAGCATGTTGTAAAGTGACGTTAAATTCACAAGCATCATTTCTCAGAGACTGGCTTTCTAATTTAAGCCACTCAATAAAGTCGGTATGGA
>XM_021586367.2
AGTCTACTGATGACCTCACGTTAGAATGTGGCAGTGTGGTGGAACAGAGGCGCTGATTGGTCGCCCGTGTCACAGCGGTACTTCAAAGCCGGAGAGGACCTACAATTGTGGTGGAATGGGCGGAACACATCATTGTATTGCACACCTCTAAAAAAACACTGCTGTGATTCATAAATATAAAAAGATCCTCTGAGGAGGGCACTTTTTGTGATGGCAACTTCACTTCTAGGGGTGAGTCTAAGGGGTTTCTTGCTGGTTTAATTAGTTATTTTATTGTCCAGCGGAGGGGATTAACATTGCTTCCGTCACACTAGGAAAGACAGTTCGTTGATTATGTTTTAAGCAAGTGGGTCACGAGTAAAACGCTGAGATTCATTTCGCAACGACAGAGAGACGCGCGCGGGATATAAGTTTCTACTGATGTGCACAAGACGCGCATGTTGTTGTACATGTCATATGTAACGTCATTTAATAGTTTTGTTATAGCTACATTTTGGTGCGTTCTATTTCATCTCAGTCTACAGGAGGAGCCGAGGCTAGGATCGACTCCTTTAGCCATGTTGGCTGCGACATGCAACAAGATAGGGAGTCCGAGCCCATCACCATCCTCCATTTCGGATAATTCTTCATCTTTTGGGAAAGGCTTCCACCCGTGGAAGCGAGCCACCGCCAGCAGCTGCAGCCTTGGGTCCGGCCTGTCCGGTTTTGGAGTGTCCCGTAACGGAGCTGGTCTATCGGACTCGTTTGGCACCAACAGCTCTCCCGGATCCAGTGCCTTCTCCCTAACGTCCGGCAACTCATCCACGCCCCACTTTGGAAACGACTATTCTGTATTTCAGGCCTCCGTTACAAACAGTTCTCAAGAACCCAGCCATCAGCCCGTCTTCATTTCCAAGGTGCACTCCTCAGTGGACAGTCTGCAAGGCATCTACCCGAGAATGAGCGTTGCACATCCGTACGAGTCCTGGTTCAAGTCGTCCCATCATGGTATCCCCACAGGAGAGGTTGGCACCACCGGCGCGTCTGCATGGTGGGATGTGGGAGCGGGTTGGATTGATGTTCAGAACCCGAGTGGAGCAGCTCTACAGTCCTCGTTGCACTCCGGTGGACTCCAGACATCGTTACACTCTCCTTTAGGGGGCTACAATTCCGATTACTCCAGCCTAAGTCACTCAGCCTTCAGTACAAGTCCCTCTCCACACCTTTTGACAACCGGACAACACCTGATGGACGGTTACAAGCCGGTGTTATCCTCTTATCCGGACTCCAGTCCGTCTCCATTAGGCGGAGCAGGGGGGAATATGTTATCTGGGGGGCCAACGGCCTCTCTAGCGGGGTCTCCCCGGTCCTCCGCACGGCGCTACTCTGGCAGAGCCACCTGCGACTGTCCCAACTGTCAGGAGTCGGAAAGGCTGGGGCCGGCAGGAGCAAGTCTGCGGAGGAAAGGGCTCCATAGCTGTCACATTCCGGGCTGTGGAAAGGTTTACGGCAAAACGTCGCACCTCAAGGCGCACTTGAGGTGGCACACCGGAGAGAGACCGTTTGTGTGTAACTGGCTGTTTTGCGGGAAGAGGTTTACGCGCTCTGATGAGCTCCAGCGACACTTGCGCACGCACACCGGGGAGAAAAGATTCGCCTGTCCGGTCTGCAACAAGAGGTTTATGCGGAGCGACCATCTGAGTAAACACGTAAAGACTCACAGCGCCGGGGGCTCCGCCGGGTCTGGCTCTGGCAgcgggggaaagaggggaagcgATACCGACAGTGAGCACAGTGCACCGGGGAGCCCTCGATGCCATTCCCCCGACCTGTTGCAAGCTCCCGAATCTACCCCGGGTACGGGAAACGAACGGCCTTTCTAAACTCTCTCGACTAAGTATAATATCTGAGAAAACATATGATCTAAGGGAAATGGCTAAACTACAGTGGACATACGTCGAGTATGCGTAATTATGCTAATGTGTGCAAGTTGAGTTAATCAAGTGATTTAGACTACTGATCAAATGATATCTCCTAGTATCCTATTGATGACGTGGGGTGTACAGGTCAAATACAGTACTGGTAAAGTAATCCTGAAGGCACACTGGAACACTGGGGCACAATGTAAACACATCAGTGTTCTTCTAACGCACAGACTGATCCAACCGGGGACGCCTATACTTTGGTGTATGTACCCTTTTGAGTGTTTTTACGCAACCTGGTTATTACATGGGTATTACAATAAGCAAGAAATAGACAACGTTGTTCTATCACTTGGTGATAATATGTGTCCTGCAATATCGTGTTACTGCTGTGCTGACGTACTTTTATTCAAAACCAAACTGTGGCACTTTATTAGCCTGTTGAACACTGAAATGATCAGTACTCGTCCTTTTCGACGGCTCCTTTGTAAGAACAAATCACTGTAGCTGTTTATGTGCGGTGATCCACGTTTTGTTTATGTCCTGATCTACCCTATCGAACACATCGCCTGTTTATTATTAATAATGGAGGAAAAGTTATGTCACCCGTTGGTAAAACGCTCCACGGATACTATCAGAAAGAGCCTGTCCAAGTTTGTAATGAATACCTACATTTCACGTCACTGCAAGGCTGTATATAATGAGAAATGTAATAGCCTAGAAAATTATTCCGCACCAATGTAAAGGTGAGTTATGTATTTGTCCATGAGACGATTTTGTATAGTCATTTCTAGTTGTACATTTGGCTCTAGTAAATATCTGAACATGTACGGAAGTGTATTTTGacattattgttttattttgttttgtttgtttgtcaggaTATAAAAAATGTTATTGTGGGGAGTTATATTTAACCACGAGTTTTACTTGTATTTCTGAGTCTTTTAATAGACGCACTTTGAATTTATTTGTAAGAAGATTTCGAAATCATTCACTGTTTATTATTCTCATCTTTTAATTTAAGTAAGCATGTTGTAAAGTGACGTTAAATTCACAAGCATCATTTCTCAGAGACTGGCTTTCTAATTTAAGCCACTCAATAAAGTCGGTATGGA
>XM_036965672.1
TAAGCACGTGACTGCGCAACCTTGTCAGTTGGCTAGAACACATGTTGTGATTAGACCACCGGTGGACGAGcaagcctctctctcctcagttaTTCCTAATTAAACGCAATTCCCAAAGTACCATTTATCTTGCAGGAGACAGGGTCTACTGTTGTACCGCCTGCGGGTGGAGGGGATGCAGCGCTGCGCTCAGCCTCGTGCACTACAGACAGAAACATCGAGGGTCAATCGATATCAATATGGCGCCGAGTGGAGCACGGAGGAGCCGAGGCTAGGATCGACTCCTTTAGCCATGTTGGCTGCGACATGCAACAAGATAGGGAGTCCGAGCCCATCACCATCCTCCATTTCGGATAATTCTTCATCTTTTGGGAAAGGCTTCCACCCGTGGAAGCGAGCCACCGCCAGCAGCTGCAGCCTTGGGTCCGGCCTGTCCGGTTTTGGAGTGTCCCGTAACGGAGCTGGTCTATCGGACTCGTTTGGCACCAACAGCTCTCCCGGATCCAGTGCCTTCTCCCTAACGTCCGGCAACTCATCCACGCCCCACTTTGGAAACGACTATTCTGTATTTCAGGCCTCCGTTACAAACAGTTCTCAAGAACCCAGCCATCAGCCCGTCTTCATTTCCAAGGTGCACTCCTCAGTGGACAGTCTGCAAGGCATCTACCCGAGAATGAGCGTTGCACATCCGTACGAGTCCTGGTTCAAGTCGTCCCATCATGGTATCCCCACAGGAGAGGTTGGCACCACCGGCGCGTCTGCATGGTGGGATGTGGGAGCGGGTTGGATTGATGTTCAGAACCCGAGTGGAGCAGCTCTACAGTCCTCGTTGCACTCCGGTGGACTCCAGACATCGTTACACTCTCCTTTAGGGGGCTACAATTCCGATTACTCCAGCCTAAGTCACTCAGCCTTCAGTACAAGTCCCTCTCCACACCTTTTGACAACCGGACAACACCTGATGGACGGTTACAAGCCGGTGTTATCCTCTTATCCGGACTCCAGTCCGTCTCCATTAGGCGGAGCAGGGGGGAATATGTTATCTGGGGGGCCAACGGCCTCTCTAGCGGGGTCTCCCCGGTCCTCCGCACGGCGCTACTCTGGCAGAGCCACCTGCGACTGTCCCAACTGTCAGGAGTCGGAAAGGCTGGGGCCGGCAGGAGCAAGTCTGCGGAGGAAAGGGCTCCATAGCTGTCACATTCCGGGCTGTGGAAAGGTTTACGGCAAAACGTCGCACCTCAAGGCGCACTTGAGGTGGCACACCGGAGAGAGACCGTTTGTGTGTAACTGGCTGTTTTGCGGGAAGAGGTTTACGCGCTCTGATGAGCTCCAGCGACACTTGCGCACGCACACCGGGGAGAAAAGATTCGCCTGTCCGGTCTGCAACAAGAGGTTTATGCGGAGCGACCATCTGAGTAAACACGTAAAGACTCACAGCGCCGGGGGCTCCGCCGGGTCTGGCTCTGGCAgcgggggaaagaggggaagcgATACCGACAGTGAGCACAGTGCACCGGGGAGCCCTCGATGCCATTCCCCCGACCTGTTGCAAGCTCCCGAATCTACCCCGGGTACGGGAAACGAACGGCCTTTCTAAACTCTCTCGACTAAGTATAATATCTGAGAAAACATATGATCTAAGGGAAATGGCTAAACTACAGTGGACATACGTCGAGTATGCGTAATTATGCTAATGTGTGCAAGTTGAGTTAATCAAGTGATTTAGACTACTGATCAAATGATATCTCCTAGTATCCTATTGATGACGTGGGGTGTACAGGTCAAATACAGTACTGGTAAAGTAATCCTGAAGGCACACTGGAACACTGGGGCACAATGTAAACACATCAGTGTTCTTCTAACGCACAGACTGATCCAACCGGGGACGCCTATACTTTGGTGTATGTACCCTTTTGAGTGTTTTTACGCAACCTGGTTATTACATGGGTATTACAATAAGCAAGAAATAGACAACGTTGTTCTATCACTTGGTGATAATATGTGTCCTGCAATATCGTGTTACTGCTGTGCTGACGTACTTTTATTCAAAACCAAACTGTGGCACTTTATTAGCCTGTTGAACACTGAAATGATCAGTACTCGTCCTTTTCGACGGCTCCTTTGTAAGAACAAATCACTGTAGCTGTTTATGTGCGGTGATCCACGTTTTGTTTATGTCCTGATCTACCCTATCGAACACATCGCCTGTTTATTATTAATAATGGAGGAAAAGTTATGTCACCCGTTGGTAAAACGCTCCACGGATACTATCAGAAAGAGCCTGTCCAAGTTTGTAATGAATACCTACATTTCACGTCACTGCAAGGCTGTATATAATGAGAAATGTAATAGCCTAGAAAATTATTCCGCACCAATGTAAAGGTGAGTTATGTATTTGTCCATGAGACGATTTTGTATAGTCATTTCTAGTTGTACATTTGGCTCTAGTAAATATCTGAACATGTACGGAAGTGTATTTTGacattattgttttattttgttttgtttgtttgtcaggaTATAAAAAATGTTATTGTGGGGAGTTATATTTAACCACGAGTTTTACTTGTATTTCTGAGTCTTTTAATAGACGCACTTTGAATTTATTTGTAAGAAGATTTCGAAATCATTCACTGTTTATTATTCTCATCTTTTAATTTAAGTAAGCATGTTGTAAAGTGACGTTAAATTCACAAGCATCATTTCTCAGAGACTGGCTTTCTAATTTAAGCCACTCAATAAAGTCGGTATGGA

Function

NR:

description
transcription factor Sp8 isoform X2

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function

KEGG:

id description
K09198 SP8; transcription factor Sp8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586374.2 False 2719 mRNA 0.48 2 2286294 2289546
XM_021586367.2 False 3019 mRNA 0.47 2 2286294 2289553
XM_036965672.1 True 2754 mRNA 0.48 2 2286294 2292006

Neighbor

gene id symbol gene type direction distance location
LOC110506602 LOC106595809 coding downstream 36785 2243487 ~ 2249509 (-)
LOC118944471 LOC106573719 coding downstream 56856 2225818 ~ 2229438 (-)
LOC118936266 twist1 coding downstream 90868 2193797 ~ 2195426 (-)
LOC118944769 NA coding downstream 95753 2174258 ~ 2190541 (-)
LOC110516567 LOC106595628 coding downstream 332931 1916571 ~ 1953363 (-)
LOC118944775 NA coding upstream 62277 2354283 ~ 2388299 (-)
LOC118944776 LOC105018831 coding upstream 169157 2461163 ~ 2521910 (-)
LOC118964348 LOC106605991 coding upstream 254228 2546234 ~ 2553372 (-)
LOC110519055 LOC106606020 coding upstream 275034 2567040 ~ 2581440 (-)
LOC110520772 LOC108270036 coding upstream 291234 2583240 ~ 2604766 (-)
G216202 LOC106574003 non-coding downstream 1980 2279296 ~ 2284314 (-)
G216200 LOC106574003 non-coding downstream 8097 2276861 ~ 2278197 (-)
G216199 NA non-coding downstream 15463 2267715 ~ 2270831 (-)
G216188 NA non-coding downstream 43999 2241730 ~ 2242295 (-)
G216216 NA non-coding upstream 10940 2302946 ~ 2303148 (-)
G216217 NA non-coding upstream 12369 2304375 ~ 2304578 (-)
G216225 NA non-coding upstream 17157 2309163 ~ 2309366 (-)
G216228 NA non-coding upstream 21127 2313133 ~ 2313366 (-)
G216258 NA non-coding upstream 63666 2355672 ~ 2356333 (-)
G216059 NA other downstream 160942 2124176 ~ 2125352 (-)
G216066 NA other downstream 164437 2121203 ~ 2121857 (-)
G216038 NA other downstream 227865 2057915 ~ 2058429 (-)
LOC110519742 LOC106595845 other downstream 623227 1661660 ~ 1673583 (-)
G216811 NA other upstream 444855 2736861 ~ 2738467 (-)
G216902 LOC106606079 other upstream 753999 3046005 ~ 3059744 (-)
G217261 NA other upstream 1046180 3338186 ~ 3338580 (-)
G217459 NA other upstream 1394396 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 2147090 4439096 ~ 4440437 (-)

Expression


Co-expression Network