LOC118944775


Basic Information

Item Value
gene id LOC118944775
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2354283 ~ 2388299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040075.1
ttAGTTTGGAGAATAAATATGTTATACCTCCAGATCTAGACAAGCAGTGTTGTTGATAAGCAGTGTAGGCTAGTGTTCAACATACCGCTTAGCTTCTCCTCTCTTTATGGAGTAACCCAGCTGACCTTTGCCCCCGATTTGTATTGAAAGTCACAACATAAAATCAAGAAGGCAAAACggagagtgtttttttttttcacagcTCTAGTGtttgccctctcttcaccacttATGCTGCTTTGGTGTCTACTTTAAAAGGTGGAAGTATTCATTACCAGCTCTGCAGTGCTCCTGAAGAAAAGACCGGATCCTACCGgactgcagtggagatcagattgaagagggggaagagaggaaagaaaatACCCGAAGATGAGGTAAAGTAGCACCGAAGACCAATGTTGGCACaagaagaggaaggagacagagggtacgtccctaatggaaccctattccctataaagtggaTTACTTTTAACAAAAGccatatgggtcctggtcaaaagttgtgcactacatagggaatagggtgccatttgggatgccgagTAGCTAGGAGGCTACAAACAGACCATGAAGCAGCTAGCTAAGGATTACTGAGTCTGTGTTTCAGATTAAGGCCTGAAGAccaacaagtgttaaacaaagacagcagggacaggaagaggaaatGAAATGTTtacagtgaaggagaggaggggtggcagAGGATAGTGATAACTGACGGAGGACCAGACTTCCTCTGCTACTGTCACTGGAGGTTAGAGATGTTCTCAGAGAACTGGTGTCATTGGTGGAGAAATAAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040075.1 True 809 mRNA 0.44 3 2354283 2388299

Neighbor

gene id symbol gene type direction distance location
sp8b LOC106573674 coding downstream 62277 2286294 ~ 2292006 (-)
LOC110506602 LOC106595809 coding downstream 104774 2243487 ~ 2249509 (-)
LOC118944471 LOC106573719 coding downstream 124845 2225818 ~ 2229438 (-)
LOC118936266 twist1 coding downstream 158857 2193797 ~ 2195426 (-)
LOC118944769 NA coding downstream 163742 2174258 ~ 2190541 (-)
LOC118944776 LOC105018831 coding upstream 72864 2461163 ~ 2521910 (-)
LOC118964348 LOC106605991 coding upstream 157935 2546234 ~ 2553372 (-)
LOC110519055 LOC106606020 coding upstream 178741 2567040 ~ 2581440 (-)
LOC110520772 LOC108270036 coding upstream 194941 2583240 ~ 2604766 (-)
LOC110517891 LOC106606082 coding upstream 467799 2856098 ~ 2869094 (-)
G216228 NA non-coding downstream 40917 2313133 ~ 2313366 (-)
G216225 NA non-coding downstream 44917 2309163 ~ 2309366 (-)
G216217 NA non-coding downstream 49705 2304375 ~ 2304578 (-)
G216216 NA non-coding downstream 51135 2302946 ~ 2303148 (-)
G216202 LOC106574003 non-coding downstream 69969 2279296 ~ 2284314 (-)
G216390 NA non-coding upstream 95535 2483834 ~ 2484039 (-)
G216391 NA non-coding upstream 96223 2484522 ~ 2484973 (-)
G216411 NA non-coding upstream 136036 2524335 ~ 2524542 (-)
G216464 NA non-coding upstream 179798 2568097 ~ 2570484 (-)
G216059 NA other downstream 228931 2124176 ~ 2125352 (-)
G216066 NA other downstream 232426 2121203 ~ 2121857 (-)
G216038 NA other downstream 295854 2057915 ~ 2058429 (-)
LOC110516567 LOC106595628 other downstream 401695 1916571 ~ 1953363 (-)
LOC110519742 LOC106595845 other downstream 691216 1661660 ~ 1673583 (-)
G216811 NA other upstream 348562 2736861 ~ 2738467 (-)
G216902 LOC106606079 other upstream 657706 3046005 ~ 3059744 (-)
G217261 NA other upstream 949887 3338186 ~ 3338580 (-)
G217459 NA other upstream 1298103 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 2050797 4439096 ~ 4440437 (-)

Expression


Co-expression Network