LOC118944474


Basic Information

Item Value
gene id LOC118944474
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2414471 ~ 2419132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039814.1
CAGAGGGTGTGGGTGTAAAAGCACAGACTCTAGACTCTCAACCCACGCTCTATTGCCTCCTCCCAGTCCTCCTGCCCAcagctgcctgcctgctgcctgccgCCTCTGGCTGAGCTGTAATTAGCAGGGTTTTGTTCCCACCTAACGACGCTATTATCCCCGAACAGTGGCGGTGTACACGGGAGACATAAGACATTATCAATTATGAACAACTCACTGACTTGGTGTCGGTCAATACATGGCTTTCAAAGTGAGTGATATAACCGTGCTGTAACCATTTCTGTGTTCACACTTCACTCTTTTCTCAGTTGTTTTCTACGGCTGCTGTACTGTAGGCTGCTCTGGTGCACACGGCTGAAACGGCGCATCTGAGGTACTTTATGGATCTGTTGCTGGAGAGGGGCCAACCCCTGATGCTGGTGGGGAATGCAGGCGTGGAGAATACTTCTCTGGTCGGGAATCAGGTAGACCACCTGACAAATATCGACATGACCACTGAAGTACCCCTCAACTACTACTGCACCTCCCTCATGCTGCAGAGTACGACAGGCAGAAGATAACCCTAAATCCACCACTGTCAGTATGTTGCCTGTATGAAACCTACTTCTGGGAGCTTCACCATCAACCCTGGACTACAGctggcctatctaaggggaaatcgctcagttctgcctccaggacaagactcatgacaataaatgtcaaccgGCTCTGATTACAGCTCTACACAATCAGATATACCTTAAAGCAGTCAGGTATGTATTCACCCCACCACTGTTCCTCCTGACCAAGGTGCTATTAGGGCCCAGGACTAGCAGTCATCTGTCAATGTGTTTGGCTATATAGCGCAGCAACATCCATCTCCGACTAACGCTGCTGTCCCACCTATTGATTACCACCTAAATACATCTGTTTCAAAGCAAAGTTTCCAGAACAGCTTGAGCTGGACCAATTTGGGATGATCGGCTTTTGGTAGCTAAGCAATGTAATCGAAAAGGATTCATTTGAGTGCAACACCTAAAATGTATCCTTTTCTGTGTGGAATTAATTTTGTGTTGTAATAAAATAAGATCTTAGGATACATACAGATGCTCTTGATGCCTGTGTGTTAGTAAGAAAGTATGTGATGATAAACCATTGGTTCAATGGGTACGACGTCATCATTGTGGGCGTGGCACCCCGTGTAATGACCTGCGTCTCCAGAGGCATAACAGTAAGTCAAATGACATAGCATCGGAAGTAAATAATGTGAAGGTTATAAAAAACTAAGAAAGGATATTCAGTGTCTCATTACAACACATTTTGTATGTAATTGTGAATCAACATGACTGTAAATGGTTTTCTTACTAATCTCACCTAATTTTGAATGTTGACATTTTGACAGTGTCCCAGTAGGCCAATGGCCTACTGTGAAATTGGGACTTCCTGTTACTGTGAAACTGGGACATCCTGTTACTGTGAAACTGGGACATCCTGTTACTGTGAAACTGGGACATCCCGTTACTGTGAAACTGGGACATCccgttactgtcaaactgggacatcccgttactgtcaaactgggacatcccgttactgtcaaactgggacatcccgttactgtcaaactgggacatcccgttactgtcaaactgggacatcctgttactgtcaaactgggaaaCTGCTCTAGGTCATTtta

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 9, axonemal

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039814.1 True 1681 mRNA 0.46 3 2414471 2419132

Neighbor

gene id symbol gene type direction distance location
abcb5 LOC106574003 coding upstream 130157 2258551 ~ 2284314 (+)
LOC110513668 LOC106595161 coding upstream 290567 2010277 ~ 2123904 (+)
ahr1a LOC106605709 coding upstream 426991 1960781 ~ 1987480 (+)
LOC118944758 LOC100136727 coding upstream 529565 1882585 ~ 1884906 (+)
LOC118944757 LOC100136727 coding upstream 536387 1875760 ~ 1878084 (+)
fhod3b fhod3 coding downstream 186891 2606023 ~ 2853339 (+)
LOC110517892 LOC106606083 coding downstream 452280 2871412 ~ 2883602 (+)
LOC110520727 LOC106606081 coding downstream 505309 2924441 ~ 2943873 (+)
LOC110520728 LOC106606086 coding downstream 531233 2950365 ~ 2963921 (+)
LOC110506689 LOC106606075 coding downstream 569774 2988906 ~ 2992685 (+)
G216277 NA non-coding upstream 33732 2380467 ~ 2380739 (+)
G216270 NA non-coding upstream 37789 2376319 ~ 2376682 (+)
G216237 NA non-coding upstream 80086 2333774 ~ 2334385 (+)
G216226 NA non-coding upstream 102283 2311726 ~ 2312188 (+)
G216214 NA non-coding upstream 113041 2301135 ~ 2301430 (+)
G216354 NA non-coding downstream 47566 2466698 ~ 2467315 (+)
G216357 LOC106605879 non-coding downstream 58288 2477420 ~ 2483732 (+)
G216362 NA non-coding downstream 65118 2484250 ~ 2484675 (+)
G216416 NA non-coding downstream 117557 2536689 ~ 2537038 (+)
G216433 NA non-coding downstream 147243 2566375 ~ 2567018 (+)
G215843 LOC100136727 other upstream 609216 1804388 ~ 1805255 (+)
G215830 NA other upstream 667189 1670411 ~ 1747282 (+)
LOC118944469 LOC100136727 other upstream 734364 1635598 ~ 1680107 (+)
G215820 LOC100136727 other upstream 798092 1609638 ~ 1616379 (+)
G216353 NA other downstream 42085 2461217 ~ 2462744 (+)
G216438 NA other downstream 153263 2572395 ~ 2574899 (+)
LOC110506718 LOC102207154 other downstream 598032 3017105 ~ 3022686 (+)
G216640 LOC106606088 other downstream 620854 3039986 ~ 3041517 (+)
G216673 NA other downstream 687222 3106354 ~ 3108233 (+)

Expression


Co-expression Network